Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g098390.2.1 | |
| Solyc01g099290.2.1 | |
| Solyc06g008870.2.1 | |
| Solyc09g074270.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008560 | Potato | nucleus | 66.67 | 69.57 |
| CDY03475 | Canola | nucleus | 39.35 | 58.22 |
| Bra013776.1-P | Field mustard | nucleus | 38.89 | 57.53 |
| CDY34266 | Canola | nucleus | 38.89 | 57.53 |
| AT4G24210.1 | Thale cress | cytosol | 37.96 | 54.3 |
| KRH15421 | Soybean | cytosol | 36.11 | 54.17 |
| VIT_18s0001g09700.t01 | Wine grape | nucleus | 43.06 | 50.54 |
| KRH61359 | Soybean | cytosol | 41.2 | 48.63 |
| KRH52046 | Soybean | cytosol | 38.89 | 48.28 |
| KRH05620 | Soybean | cytosol | 38.43 | 47.7 |
| GSMUA_Achr9P22610_001 | Banana | cytosol, nucleus, plastid | 34.26 | 45.4 |
| Solyc05g040040.1.1 | Tomato | cytosol | 19.91 | 28.29 |
| Solyc07g047680.1.1 | Tomato | cytosol | 21.76 | 28.14 |
| TraesCS3B01G068100.1 | Wheat | nucleus | 28.24 | 27.85 |
| TraesCS3A01G055700.1 | Wheat | nucleus | 27.31 | 27.19 |
| Zm00001d016973_P001 | Maize | nucleus | 26.39 | 24.15 |
| OQU85206 | Sorghum | nucleus, plastid | 25.93 | 20.97 |
| Zm00001d050903_P001 | Maize | cytosol | 27.78 | 15.71 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009845 |
| GO:GO:0010162 | GO:GO:0019005 | InterPro:IPR001810 | UniProt:K4BUS4 | PFAM:PF12937 | PANTHER:PTHR12874 |
| PANTHER:PTHR12874:SF10 | SMART:SM00256 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc04g078390.1 | EnsemblPlants:Solyc04g078390.1.1 | UniParc:UPI0002766A34 |
| SEG:seg | : | : | : | : | : |
Description
F-box protein GID2 [Source:Projected from Arabidopsis thaliana (AT4G24210) UniProtKB/Swiss-Prot;Acc:Q9STX3]
Coordinates
chr4:+:63131062..63131712
Molecular Weight (calculated)
24416.2 Da
IEP (calculated)
8.942
GRAVY (calculated)
-0.562
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRQFDAGET DWANFTGGDH VKKMKKEMLE LEEERKLPMK RQFEANCAAK VSGDLKKMKQ VIESPDADAD ADTEAVLLNE NLLYEVLKHV DGRTLATAAC
101: VSKQWNQTAL DERLWELICT RHSCNQQQQL RAVVLALGGF RRLYSLYLWP LSKPSPSPSA SSSNPPASAW PCLPPAPTRP LKYAAANTRW GKDEVNLSLS
201: LLSIRYYEKM NFKANK
101: VSKQWNQTAL DERLWELICT RHSCNQQQQL RAVVLALGGF RRLYSLYLWP LSKPSPSPSA SSSNPPASAW PCLPPAPTRP LKYAAANTRW GKDEVNLSLS
201: LLSIRYYEKM NFKANK
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
Arabidopsis Description
GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.