CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74459	Canola	extracellular, vacuole	73.24	77.87
CDY30245	Canola	extracellular	17.3	59.81
Bra028246.1-P	Field mustard	vacuole	85.68	55.81
CDY15950	Canola	extracellular	20.27	44.91
CDX99665	Canola	extracellular	18.92	43.21
CDY30240	Canola	cytosol, extracellular, vacuole	58.92	42.25
CDX74457	Canola	cytosol	58.38	41.7
CDY30244	Canola	cytosol, plasma membrane, plastid	56.49	41.47
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	62.97	40.24
CDX74454	Canola	cytosol	45.68	37.72
CDX74455	Canola	cytosol, plasma membrane	42.16	34.44
CDY30242	Canola	cytosol	45.14	32.12
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	51.08	30.29
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	49.19	29.31
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	48.38	28.5
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	47.84	28.5
PGSC0003DMT400024153	Potato	cytosol	48.11	28.34
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	36.76	25.56
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	36.49	25.38
GSMUA_Achr6P18710_001	Banana	cytosol	37.84	25.23
Os08t0105100-01	Rice	cytosol	35.14	23.34
KXG24173	Sorghum	cytosol	34.86	22.95
TraesCS7A01G324600.1	Wheat	cytosol	33.78	22.69
TraesCS7B01G225100.1	Wheat	cytosol	33.78	22.69
TraesCS7D01G320300.1	Wheat	cytosol	33.78	22.69
Zm00001d049737_P001	Maize	cytosol	34.32	22.44
KRH53935	Soybean	endoplasmic reticulum	48.92	15.89
CDY30239	Canola	cytosol, extracellular, plastid	0.54	3.64
CDX74458	Canola	cytosol, extracellular, plastid	0.54	3.64
CDY71334	Canola	cytosol	0.54	2.67

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078H072	EnsemblPlants:CDY30238	ProteinID:CDY30238	ProteinID:CDY30238.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00044867001
InterPro:IPR001810	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR31370	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI0004EE0319	SEG:seg	:	:	:	:

Description

BnaC04g31490DBnaC04g31490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H072]

Coordinates

chrLK032251:+:2676..4253

Molecular Weight (calculated)

42037.1 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.074

Length

370 amino acids

Sequence
(BLAST)

001: MKIGDLLSEL LLSLPEDVFT LISRLLSPSD VCNLSLCCKT LRDLVDSEKI WLVQCEVVKV LPLSEIVQWR TGISSYKALC RFLVEVTKPL VGVWVHQNPE
101: LGNVVYVMSG FLSVIGCRII PQEVGSLGIQ EGRLLWSPVF EIVSGFDGSA RFFLHGIDRE SSYLYPGFVT SIDKCCNVLL LEVEPKRREI ERTEKVRFPF
201: CKLPFCDRRK LLYLVTGHVG LPVPELSLKD DKATSLERRT MLLKRHKFGG NWNFRHVDDE IQVQGTQRKS LSNSSSAKQQ ASCSSEIRRF NLQTFLSSGD
301: FVGLSVKASK IKLTSYRGWP SMHETHFALY KLPIKIPVEE NQEYAGLWGG TFGWPPGKCT EDKPDWFAYF

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [extracellular,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.