Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30238 | Canola | vacuole | 55.81 | 85.68 |
| CDX74459 | Canola | extracellular, vacuole | 51.23 | 83.62 |
| AT5G39450.1 | Thale cress | extracellular, plasma membrane, plastid | 69.01 | 67.7 |
| Bra028247.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 56.87 | 62.36 |
| Bra028249.1-P | Field mustard | cytosol, plasma membrane | 47.71 | 55.31 |
| Bra028250.1-P | Field mustard | cytosol, plastid, vacuole | 44.37 | 52.61 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 53.35 | 48.56 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 50.53 | 46.22 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 49.82 | 45.57 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 49.47 | 44.75 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 41.9 | 44.74 |
| PGSC0003DMT400024153 | Potato | cytosol | 49.3 | 44.59 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 43.13 | 44.14 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 40.67 | 41.92 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 40.49 | 41.74 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 40.14 | 41.38 |
| KXG24173 | Sorghum | cytosol | 40.85 | 41.28 |
| Zm00001d049737_P001 | Maize | cytosol | 39.96 | 40.11 |
| Os08t0105100-01 | Rice | cytosol | 39.08 | 39.86 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 35.92 | 38.35 |
| KRH53935 | Soybean | endoplasmic reticulum | 52.29 | 26.08 |
Protein Annotations
| EnsemblPlants:Bra028246.1 | EnsemblPlants:Bra028246.1-P | EnsemblPlantsGene:Bra028246 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31370 | PFAM:PF00646 |
| PFscan:PS50181 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI000254496C | UniProt:M4EHI1 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT5G39450 (E=3e-207) | F-box family protein
Coordinates
chrA04:+:7091580..7093286
Molecular Weight (calculated)
63762.3 Da
IEP (calculated)
8.192
GRAVY (calculated)
-0.102
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIGDLLSEL LLSLPEDVFA LISRFLSPTD VCNLSLCCKT LRDLVDSEKI WLVQCEVVKV LPLSEIVQWR AGISSYKALC RFLVEVTKPL VGVWVHQNPE
101: LGNVVYVMSG FLSVIGCRII PQEVGSLGIQ EGRLLWSPVF EIVSGFDGSA RFFLHGIDRE SSYLYPGFVT SIDKCCNVLL LEVEPKRREI ERRAEKVLFP
201: FCKLPFCDRR KLLYLVTGHV GLPVPELSLK DDKAKSLERR TMLLKSGGNW SHMSLEDELC YDPIQVEIND ELWTHLGYGG DFRHVDDEVQ VQGTQRKSLS
301: KYFRSGIKSI LRRSNSTGSS SSSAKQQASC SSEIRRFNLQ KFLSAGDFVG LSVKASKIKL TSYRGWPSMH ETHFALYKLP IKIPVEENQE YAGLWGGTFG
401: WPPGKCTEDK PGKALFLLML TYEKSQDGSE RLLVGTKILE GTHYVMHPNG SAMFVVKIGS PTSEIFPFDD TTNGEEKYSF ECCYTGEGIA KGYGFRYPGY
501: KPGSLFVTSK GLLMFVLKET KTVLTLQRLN LEELLKKGVC VSPLPPCLNF TYLTKSHTNV FASGQRTS
101: LGNVVYVMSG FLSVIGCRII PQEVGSLGIQ EGRLLWSPVF EIVSGFDGSA RFFLHGIDRE SSYLYPGFVT SIDKCCNVLL LEVEPKRREI ERRAEKVLFP
201: FCKLPFCDRR KLLYLVTGHV GLPVPELSLK DDKAKSLERR TMLLKSGGNW SHMSLEDELC YDPIQVEIND ELWTHLGYGG DFRHVDDEVQ VQGTQRKSLS
301: KYFRSGIKSI LRRSNSTGSS SSSAKQQASC SSEIRRFNLQ KFLSAGDFVG LSVKASKIKL TSYRGWPSMH ETHFALYKLP IKIPVEENQE YAGLWGGTFG
401: WPPGKCTEDK PGKALFLLML TYEKSQDGSE RLLVGTKILE GTHYVMHPNG SAMFVVKIGS PTSEIFPFDD TTNGEEKYSF ECCYTGEGIA KGYGFRYPGY
501: KPGSLFVTSK GLLMFVLKET KTVLTLQRLN LEELLKKGVC VSPLPPCLNF TYLTKSHTNV FASGQRTS
001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
Arabidopsis Description
F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]
SUBAcon: [plasma membrane,plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.