CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	36.87	67.63
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	36.61	67.15
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	35.38	64.58
CDY30239	Canola	cytosol, extracellular, plastid	2.99	61.82
CDX74458	Canola	cytosol, extracellular, plastid	2.9	60.0
PGSC0003DMT400024153	Potato	cytosol	32.92	59.71
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	32.84	59.55
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	24.58	52.63
Bra028246.1-P	Field mustard	vacuole	26.08	52.29
CDY30240	Canola	cytosol, extracellular, vacuole	23.09	50.97
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	25.81	50.78
CDX74457	Canola	cytosol	22.91	50.39
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	22.91	50.39
GSMUA_Achr6P18710_001	Banana	cytosol	24.5	50.27
CDX99665	Canola	extracellular	7.02	49.38
CDY15950	Canola	extracellular	7.2	49.1
CDY30238	Canola	vacuole	15.89	48.92
CDY30245	Canola	extracellular	4.57	48.6
CDX74455	Canola	cytosol, plasma membrane	19.23	48.34
AT5G39460.1	Thale cress	plasma membrane	23.7	47.29
TraesCS7D01G320300.1	Wheat	cytosol	22.83	47.19
TraesCS7B01G225100.1	Wheat	cytosol	22.83	47.19
Bra028249.1-P	Field mustard	cytosol, plasma membrane	20.11	46.73
TraesCS7A01G324600.1	Wheat	cytosol	22.48	46.46
CDX74459	Canola	extracellular, vacuole	14.14	46.26
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	22.83	45.77
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	19.23	45.72
KXG24173	Sorghum	cytosol	22.48	45.55
Os08t0105100-01	Rice	cytosol	22.21	45.42
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	21.95	44.17
Zm00001d049737_P001	Maize	cytosol	21.86	43.99
CDX74454	Canola	cytosol	17.3	43.97
CDY30244	Canola	cytosol, plasma membrane, plastid	19.23	43.45
CDY30242	Canola	cytosol	19.67	43.08
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	19.58	41.92
CDY71334	Canola	cytosol	2.72	41.33
AT5G39470.1	Thale cress	extracellular	3.78	25.29

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.50.50.60	Gene3D:3.90.660.10	MapMan:50.1.8	UniProt:A0A0R0JSY5	EMBL:ACUP02003491
ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FAD/NAD-bd_sf	EnsemblPlantsGene:GLYMA_06G155700	GO:GO:0001735
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016670	GO:GO:0019538	GO:GO:0030327
GO:GO:0030328	GO:GO:0055114	InterPro:IPR001810	InterPro:IPR036188	EnsemblPlants:KRH53935	ProteinID:KRH53935
ProteinID:KRH53935.1	PFAM:PF00646	PFAM:PF07156	PFAM:PF13450	PFscan:PS50181	PANTHER:PTHR31370
InterPro:Prenylcys_lyase	SMART:SM00256	SUPFAM:SSF51905	SUPFAM:SSF81383	UniParc:UPI0006EDA8B3	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:12772956..12788308

Molecular Weight (calculated)

126231.0 Da

IEP (calculated)

8.550

GRAVY (calculated)

-0.115

Length

1139 amino acids

Sequence
(BLAST)

0001: MLLFLPDDVF AIVSRFMSPR DVCNLCLCCK SLNALVASEK LWLTQCDLLS TVPHKDLVEW RKGVASYKAL CRFLMSVKPL IGIWVHQNPE LGNVVYVMPG
0101: FVSVVGCRII PQELGPLGIE EGPILWASVF EVVSDLDGSM MFFLHGREKG VNYVYPGSVK VADRSCNVLL LEVEPGGCRN VSALLQSKSF VHHSGVEESS
0201: SSRKVCRSNS DVSSSQRVVG NGEGMVSFGK LAFSDRRKLL EVTTSQVRQK VPDKMIGPLF PGLRDDEENF QKDLVLLWKR RSLLSQMYKV GSGQNDEYKT
0301: SSQEAVDPTQ LELDDVRASF DRSRSISHPL PEEDGHTQCI KRKGFRGYVW NGIKQILGRS NTMNASPLVA KKHTSNGEIR QARLQEFLRS SDTVRLMLKA
0401: STVKLSSYRA WPNMHDSRFA LYKLPLRVPK DDQEYAGLWG GTFGWPPGKP SEDKPGKALF FLLLSYEEFQ GQQLLIATKI LEGTHYVLHP NGSAMFTANI
0501: NDPSSEPFPW DTDADSVPVN IKQAFVGEGI ASGYGFRYPG SKPGSLFVLE NGILAFIWKE SRAVLNLQRL NLQELLKKGE RVPSLPPVTN FSYLTKSYSN
0601: VFAGFPSSSN FLSSPSKRCQ RCKAMAKPRR SKMMSLKLPF LLTLFLALSQ AQPHSDDPPP PPSSNVCVIG AGIGGSSVAH FLRKYSPSST PSTKIRVFER
0701: NGRVGGRIAT VTVAGETFEA GASILHPKNL HTVDYVKILK LKVKEPTASE DSLSLGIWDG NKFVFKTVSP LSSTVPLIDK LLKLPFVNTL VSFVNSALMF
0801: VRYGFSLFKM QNFVEIAVDK FVKYYEDPGS RPIFETVDEM LQWAGLYNLT TRTLRDELVD AGLSTSLINE LVTVITRINY GQSVSMSGLG GVVSLAGSGG
0901: GLWSIEGGNW QMAAGLINQS DVALHLHEEI KSVADLGDYY ELNSTKGNSY RCEVAVVATP LDELDIQFIP PISIPERKLQ HTFTTFVRGL LNPAYFGLKA
1001: VTKIPDLVGT IEDPELPFSC IAVLKKHNEK ESTYKLFSRQ PMADTLLDSI FSVRKETIRI NWAAYPHYHA PEVFAPFILD GRHLYYVNAF ENAASTMETS
1101: AVAAENIARL ILSRYFGQVI VHSSNLSASS QGEGTHLDL

Best Arabidopsis Sequence Match ( AT5G63910.1 )
(BLAST)

001: MKDFPIAISL LFALLSPVLL PCSGDSTGGV EDDSPATVCI VGSGIGGSSV AHFLRNYSVS TGLNQAKILM FERHEIVGGR MRTVTVAGDT FEAGGSILHP
101: KNYHVKDFVE RFNLTVRLPT PIEESSAIGI WDGKRFVVKT FGSGTKFPFL DTIVSWVNDL YLFLRYGLSL LRMSSFIENT VDNFLKYYES LESRPIFDNV
201: EGMLKWSGLY NLTKLTLQEK LSEAQLSPLL VNELVTVITR INYGQSVLIS GLAGAVSLAG SGGGLWSVEG GNWQMAAKLI NHSDVTLHLN EKIESISYLE
301: NHYELKSTKG NSYKCDVTVV ATPLDEVDIQ FSPTISIPKR ELQHTHTTFV RGLLNPGYFG MKSLSDVPAL VGTLEDPLIP FSCISILRKY SKTDMTYKIF
401: TRQPASDSLL DELFSRRTET VRIDWGAYPK YHAPEVFAPF ILDDHHLYYV NAFENAASTM ETSAVAGENI ARLIISRFMT KESLSSSDKR SCSSGLHSDS

Arabidopsis Description

FLCYFarnesylcysteine lyase [Source:UniProtKB/Swiss-Prot;Acc:P57681]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.