Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G39490.1 | Thale cress | extracellular, plasma membrane, vacuole | 85.04 | 85.34 |
| AT5G39460.1 | Thale cress | plasma membrane | 70.25 | 69.88 |
| Bra028247.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 58.27 | 63.9 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 57.92 | 63.76 |
| CDX74457 | Canola | cytosol | 57.92 | 63.51 |
| CDX74455 | Canola | cytosol, plasma membrane | 47.36 | 59.38 |
| Bra028249.1-P | Field mustard | cytosol, plasma membrane | 50.18 | 58.16 |
| AT5G39450.1 | Thale cress | extracellular, plasma membrane, plastid | 57.57 | 56.48 |
| CDY71334 | Canola | cytosol | 7.39 | 56.0 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 49.12 | 55.36 |
| Bra028250.1-P | Field mustard | cytosol, plastid, vacuole | 46.3 | 54.91 |
| CDY30242 | Canola | cytosol | 49.82 | 54.42 |
| CDY30245 | Canola | extracellular | 10.21 | 54.21 |
| CDX74454 | Canola | cytosol | 40.49 | 51.34 |
| CDX99665 | Canola | extracellular | 13.91 | 48.77 |
| CDY15950 | Canola | extracellular | 14.26 | 48.5 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 48.06 | 43.75 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 46.48 | 42.51 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 46.3 | 42.35 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 39.26 | 40.18 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 37.32 | 39.85 |
| PGSC0003DMT400024153 | Potato | cytosol | 43.49 | 39.33 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 43.49 | 39.33 |
| Zm00001d049737_P001 | Maize | cytosol | 36.09 | 36.22 |
| KXG24173 | Sorghum | cytosol | 35.74 | 36.12 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 33.27 | 35.53 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 34.15 | 35.21 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 34.15 | 35.21 |
| Os08t0105100-01 | Rice | cytosol | 34.51 | 35.19 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 33.8 | 34.85 |
| AT5G39470.1 | Thale cress | extracellular | 10.21 | 34.12 |
| KRH53935 | Soybean | endoplasmic reticulum | 45.77 | 22.83 |
Protein Annotations
| MapMan:35.1 | EntrezGene:833944 | ProteinID:AED94438.1 | ArrayExpress:AT5G39480 | EnsemblPlantsGene:AT5G39480 | RefSeq:AT5G39480 |
| TAIR:AT5G39480 | RefSeq:AT5G39480-TAIR-G | EnsemblPlants:AT5G39480.1 | TAIR:AT5G39480.1 | Unigene:At.65606 | ProteinID:BAB11022.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | RefSeq:NP_198764.1 | PFscan:PS50181 | PANTHER:PTHR31370 | UniProt:Q9FLY8 | SUPFAM:SSF81383 |
| SignalP:SignalP-noTM | UniParc:UPI00001627BC | SEG:seg | : | : | : |
Description
Putative F-box protein At5g39480 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY8]
Coordinates
chr5:-:15801635..15803341
Molecular Weight (calculated)
64285.6 Da
IEP (calculated)
5.220
GRAVY (calculated)
-0.146
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLPALVDTEK MWLVQCEEVK VLPLLEIVQW RIGISSYKAL CRFLVEVVKP LLGIWVQQNP
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.