Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G39480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 69.88 | 70.25 |
| AT5G39490.1 | Thale cress | extracellular, plasma membrane, vacuole | 65.67 | 66.25 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 57.97 | 64.15 |
| Bra028247.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 57.79 | 63.71 |
| CDX74457 | Canola | cytosol | 57.44 | 63.32 |
| CDX74455 | Canola | cytosol, plasma membrane | 47.11 | 59.38 |
| AT5G39450.1 | Thale cress | extracellular, plasma membrane, plastid | 59.72 | 58.89 |
| Bra028249.1-P | Field mustard | cytosol, plasma membrane | 49.91 | 58.16 |
| CDY30245 | Canola | extracellular | 10.51 | 56.07 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 48.51 | 54.96 |
| Bra028250.1-P | Field mustard | cytosol, plastid, vacuole | 45.36 | 54.07 |
| CDY30242 | Canola | cytosol | 49.04 | 53.85 |
| CDY71334 | Canola | cytosol | 7.01 | 53.33 |
| CDX74454 | Canola | cytosol | 39.58 | 50.45 |
| CDY15950 | Canola | extracellular | 14.19 | 48.5 |
| CDX99665 | Canola | extracellular | 13.49 | 47.53 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 48.86 | 44.71 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 47.64 | 43.8 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 46.94 | 43.16 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 38.53 | 41.35 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 40.11 | 41.26 |
| PGSC0003DMT400024153 | Potato | cytosol | 43.96 | 39.97 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 43.78 | 39.81 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 34.68 | 37.22 |
| Zm00001d049737_P001 | Maize | cytosol | 36.25 | 36.57 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 35.2 | 36.48 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 35.2 | 36.48 |
| KXG24173 | Sorghum | cytosol | 35.9 | 36.48 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 34.68 | 35.93 |
| AT5G39470.1 | Thale cress | extracellular | 10.68 | 35.88 |
| Os08t0105100-01 | Rice | cytosol | 34.68 | 35.55 |
| KRH53935 | Soybean | endoplasmic reticulum | 47.29 | 23.7 |
Protein Annotations
| MapMan:35.1 | EntrezGene:833942 | ProteinID:AED94435.1 | ArrayExpress:AT5G39460 | EnsemblPlantsGene:AT5G39460 | RefSeq:AT5G39460 |
| TAIR:AT5G39460 | RefSeq:AT5G39460-TAIR-G | EnsemblPlants:AT5G39460.1 | TAIR:AT5G39460.1 | Unigene:At.65605 | ProteinID:BAB11019.1 |
| ncoils:Coil | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_198762.1 | PFscan:PS50181 | PANTHER:PTHR31370 | UniProt:Q9FLZ1 |
| SUPFAM:SSF81383 | SignalP:SignalP-noTM | UniParc:UPI000009EE50 | SEG:seg | : | : |
Description
Putative F-box protein At5g39460 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLZ1]
Coordinates
chr5:-:15788289..15790004
Molecular Weight (calculated)
64364.3 Da
IEP (calculated)
5.002
GRAVY (calculated)
-0.159
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLCALVDSEK TWLVQCEEVK VLPLIELVQW RIGISSYKAL CRFLVEVVKP LLGIWVQENP
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPLWI QEGQVKWSPV FEIICGFDGS KGFFLHGRDK QGSFLYPGFV MDIEKSCNVL LLEVEPRSEK SSCNEIEREV
201: GDPFGDLDFS DRMNLLDIVT KHVSLRVDEP LTGNLFPTRS KYDEAMMLER RNMLLKMLKF GGNWKHINLE EDEQLCYNHI EIDIKKLLEN LGDDIDNMED
301: IEDQIEVTPR KKSFRRFLRS GIKHILGKFS SSKINSPSSS ETRRSNRQSF LSSGNTFCLS LKASCTLMSS YEGWPIMSAD NFSLHKLPMK KPLDHDVYAG
401: LWGGTFGWPP GKDIEDESLL LLMLTYGESE EGSERILFGT KILSYFAEHP NGSSMFVVNI DTPSLEPFPF DTDGRDFEHS YTGEGIADGY GFRYPGSKPG
501: SLFVSSNDLL AFVWQGTEDV ITLQRINLGE ILKKSLGSCV SPLLPTKNFT YTKRSYSNVF AKSSTYSSSS E
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPLWI QEGQVKWSPV FEIICGFDGS KGFFLHGRDK QGSFLYPGFV MDIEKSCNVL LLEVEPRSEK SSCNEIEREV
201: GDPFGDLDFS DRMNLLDIVT KHVSLRVDEP LTGNLFPTRS KYDEAMMLER RNMLLKMLKF GGNWKHINLE EDEQLCYNHI EIDIKKLLEN LGDDIDNMED
301: IEDQIEVTPR KKSFRRFLRS GIKHILGKFS SSKINSPSSS ETRRSNRQSF LSSGNTFCLS LKASCTLMSS YEGWPIMSAD NFSLHKLPMK KPLDHDVYAG
401: LWGGTFGWPP GKDIEDESLL LLMLTYGESE EGSERILFGT KILSYFAEHP NGSSMFVVNI DTPSLEPFPF DTDGRDFEHS YTGEGIADGY GFRYPGSKPG
501: SLFVSSNDLL AFVWQGTEDV ITLQRINLGE ILKKSLGSCV SPLLPTKNFT YTKRSYSNVF AKSSTYSSSS E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.