CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028249.1-P	Field mustard	cytosol, plasma membrane	98.45	91.02
CDY30242	Canola	cytosol	96.03	83.65
CDY71334	Canola	cytosol	13.47	81.33
CDY30245	Canola	extracellular	14.79	62.62
CDY30240	Canola	cytosol, extracellular, vacuole	67.77	59.5
CDX74457	Canola	cytosol	67.11	58.69
CDY30239	Canola	cytosol, extracellular, plastid	7.06	58.18
CDX74458	Canola	cytosol, extracellular, plastid	6.84	56.36
CDX99665	Canola	extracellular	18.54	51.85
CDY15950	Canola	extracellular	18.32	49.7
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	59.38	47.36
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	59.16	47.35
AT5G39460.1	Thale cress	plasma membrane	59.38	47.11
CDY30244	Canola	cytosol, plasma membrane, plastid	51.66	46.43
CDX74454	Canola	cytosol	43.71	44.2
CDY30238	Canola	vacuole	34.44	42.16
CDX74459	Canola	extracellular, vacuole	30.68	39.94
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	50.55	36.88
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	49.89	36.39
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	50.11	36.38
GSMUA_Achr6P18710_001	Banana	cytosol	41.94	34.23
PGSC0003DMT400024153	Potato	cytosol	47.24	34.08
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	39.96	34.02
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	47.02	33.92
TraesCS7A01G324600.1	Wheat	cytosol	38.63	31.76
TraesCS7D01G320300.1	Wheat	cytosol	38.41	31.58
KXG24173	Sorghum	cytosol	38.85	31.32
TraesCS7B01G225100.1	Wheat	cytosol	37.97	31.22
Os08t0105100-01	Rice	cytosol	38.19	31.06
Zm00001d049737_P001	Maize	cytosol	38.41	30.74
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	34.66	29.51
AT5G39470.1	Thale cress	extracellular	7.28	19.41
KRH53935	Soybean	endoplasmic reticulum	48.34	19.23

Protein Annotations

EnsemblPlants:CDX74455	EnsemblPlantsGene:GSBRNA2T00114327001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
PANTHER:PTHR31370	ProteinID:CDX74455	ProteinID:CDX74455.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EDDEB0
MapMan:35.1	:	:	:	:	:

Description

BnaA04g09340D

Coordinates

chrLK031801:-:419307..420859

Molecular Weight (calculated)

51581.0 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.330

Length

453 amino acids

Sequence
(BLAST)

001: MFRLLSPRDI CNLSFCCKSL CDIANSENVW LDQCEIVKVI PSSEIVKWRT GVSSYKSLCR FLVEAMKPLA GVWVYHEPDL GNVVYVMPGF LSVVGCRIIP
101: QEVGPLGIQE GRIMWSPVFE IICGFDGSTK FFLHGRDRKH SCLYPGLVTV IEKSCNVLSL EVEPRLEKTS SEASRQGRED EGWLFYNPKP VDINEMWEKN
201: RCVYFEYIAT DEEREIRYLN RQAFSSGDTF GLSLKGSYTD VFSHLGWPNI NGDDFSLYKL PVNNPMNDQE EYAGLWGGTF GWPPGRCDED ETGNAFYLLM
301: LSYEKSEKNN GKRLIGTKIL EGNDYVDRPN GTAMFVVDID TPSLEPFPLD ADGRDFEHSY TGRGISDGYG FRYPGSKPGS LYVISDDHFA FVWHETKHVF
401: TLKRVNLEEI LKKDLGMCVP PLPPINNFTF MGRSYTNVFT ESWFYSSSSD SDE

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.