Factsheet for GSMUA_Achr8P32580_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 3
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	55.45	55.45
GSMUA_Achr6P18710_001	Banana	cytosol	51.32	49.19
CDY30245	Canola	extracellular	8.08	40.19
CDX99665	Canola	extracellular	12.22	40.12
TraesCS7B01G225100.1	Wheat	cytosol	41.17	39.75
CDY15950	Canola	extracellular	12.41	39.52
TraesCS7A01G324600.1	Wheat	cytosol	40.6	39.2
TraesCS7D01G320300.1	Wheat	cytosol	40.41	39.02
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	45.11	38.46
KXG24173	Sorghum	cytosol	40.04	37.9
Os08t0105100-01	Rice	cytosol	39.66	37.88
Zm00001d049737_P001	Maize	cytosol	39.85	37.46
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	43.23	37.04
CDY30238	Canola	vacuole	25.56	36.76
CDY30240	Canola	cytosol, extracellular, vacuole	35.15	36.24
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	42.11	36.07
CDY71334	Canola	cytosol	5.08	36.0
Bra028246.1-P	Field mustard	vacuole	38.35	35.92
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	34.96	35.91
CDX74457	Canola	cytosol	34.77	35.71
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	38.72	35.58
CDX74459	Canola	extracellular, vacuole	22.74	34.77
AT5G39460.1	Thale cress	plasma membrane	37.22	34.68
CDX74455	Canola	cytosol, plasma membrane	29.51	34.66
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	40.79	34.55
PGSC0003DMT400024153	Potato	cytosol	40.79	34.55
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	31.02	34.45
Bra028249.1-P	Field mustard	cytosol, plasma membrane	31.2	33.88
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	35.53	33.27
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	35.15	33.04
CDY30244	Canola	cytosol, plasma membrane, plastid	31.2	32.94
CDX74454	Canola	cytosol	27.63	32.81
CDY30242	Canola	cytosol	30.64	31.35
CDY30239	Canola	cytosol, extracellular, plastid	2.82	27.27
CDX74458	Canola	cytosol, extracellular, plastid	2.63	25.45
KRH53935	Soybean	endoplasmic reticulum	41.92	19.58
AT5G39470.1	Thale cress	extracellular	5.64	17.65

Protein Annotations

EnsemblPlants:GSMUA_Achr8P32580_001	EnsemblPlants:GSMUA_Achr8T32580_001	EnsemblPlantsGene:GSMUA_Achr8G32580_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646
PFscan:PS50181	SUPFAM:SSF81383	UniParc:UPI0002967153	UniProt:M0TVL0	MapMan:35.1	:

Description

Putative F-box protein At5g39450 [Source:GMGC_GENE;Acc:GSMUA_Achr8G32580_001]

Coordinates

chr8:-:33922223..33926224

Molecular Weight (calculated)

59735.2 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.053

Length

532 amino acids

Sequence
(BLAST)

001: MSDEAAAEVC GSGLFLALPD DVLAFISGRL GLRDLFALAL CCRGLWEAIA DSEKIWFAQC CRIGPPPHAL PLWREGVDSY FTLCRFLASV EPLLGVWVHQ
101: NPELRNVVCV LWGFLSVVGV SVIPQEVGPL GLDSGPLLWA PVFEVLADAD GAPSRLFLHG RGDRGEDRLY PGTVQPIDSS CNVLLLEVDG KYPTFTRHLR
201: RLNTNVISSP PANPFSQLSF SDRNWLLNEV ADTVALEIPS DLATAPLFER CSPCNDTKLL AGRWSQLTEM HMLNRRRIKM KATNRLVPGL MKHRSLDGCD
301: GINDHQSTVA GKRKAFFSVF ENLRDEPKQY MSRSMFPQMD ATNMAWPDMS YDWFALYKLP MQVPTACHEH AGLWGGTFGW PFEDKPEKAL FLVLLSYEEV
401: MGHRLLIATK ILEGTQRLLY PNGSPMFTVR LDEAPKNPFP WGIDRESPRV KVKKSYNGEG VVTSYGFLCS DLEPGALYVL QNGLLAFVWE KSDSVITLQR
501: IVLQELLRKG ERTEHHSILV SLSHLIFCWI KN

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.