Factsheet for Bra028249.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74455	Canola	cytosol, plasma membrane	91.02	98.45
CDY30242	Canola	cytosol	87.55	82.5
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	66.12	62.55
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	49.8	50.94
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	58.16	50.35
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	58.16	50.18
AT5G39460.1	Thale cress	plasma membrane	58.16	49.91
Bra028246.1-P	Field mustard	vacuole	55.31	47.71
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	49.18	38.81
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	48.98	38.46
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	48.16	38.0
GSMUA_Achr6P18710_001	Banana	cytosol	40.61	35.86
PGSC0003DMT400024153	Potato	cytosol	45.71	35.67
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	38.57	35.53
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	45.51	35.51
TraesCS7A01G324600.1	Wheat	cytosol	37.14	33.03
KXG24173	Sorghum	cytosol	37.76	32.92
TraesCS7D01G320300.1	Wheat	cytosol	36.94	32.85
TraesCS7B01G225100.1	Wheat	cytosol	36.53	32.49
Zm00001d049737_P001	Maize	cytosol	37.35	32.33
Os08t0105100-01	Rice	cytosol	36.73	32.32
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	33.88	31.2
KRH53935	Soybean	endoplasmic reticulum	46.73	20.11
AT5G39470.1	Thale cress	extracellular	6.73	19.41

Protein Annotations

EnsemblPlants:Bra028249.1	EnsemblPlants:Bra028249.1-P	EnsemblPlantsGene:Bra028249	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	PANTHER:PTHR31370	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000254496F	UniProt:M4EHI4
MapMan:35.1	:	:	:	:	:

Description

AT5G39460 (E=7e-078) | F-box family protein

Coordinates

chrA04:+:7099492..7101044

Molecular Weight (calculated)

55742.1 Da

IEP (calculated)

4.937

GRAVY (calculated)

-0.300

Length

490 amino acids

Sequence
(BLAST)

001: MFRLLSPRDI CNLSFCCKSL CDIANSENVW LDQCEIVKVI PSSEIVKWRT GVSSYKSLCR FLVEAMKPLA GVWVYHEPDL GNVVYVMPGF LSVVGCRIIP
101: QEVGPLGIQE GRIMWSPVFE IICGFDGSTK FFLHGRDRKH SCLYPGLVTV IEKSCNVLSL EVEPRLEKTS SEASRQGLFS KLSCTDKRNL VELVTNHVGL
201: HVSEPLSVKL FPTRREDEGW LFYNPKPVDI NEMWEKNRCV YFEYIATDEE REIRYLNRQA FSSGDTFGLS LKGSYTDVFS HLGWPNINGD DFSLYKLPVN
301: NPMNDQEEYA GLWGGTFGWP PGRCDEDETG NAFYLLMLSY EKSEKNNGKR LIGTKILEGN DYVDRPNGTA MFVVDIDTPS LEPFPLDADG RDFEHSYTGR
401: GISDGYGFRY PGSKPGSLYV ISDDHFAFVW HETKHVFTLK RVNLEEILKK DLGMCVPPLP PINNFTFMGR SYTNVFTESW FYSSSSDSDE

Best Arabidopsis Sequence Match ( AT5G39480.1 )
(BLAST)

001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLPALVDTEK MWLVQCEEVK VLPLLEIVQW RIGISSYKAL CRFLVEVVKP LLGIWVQQNP
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE

Arabidopsis Description

Putative F-box protein At5g39480 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY8]
SUBAcon: [extracellular,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.