Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G39480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 85.34 | 85.04 |
| AT5G39460.1 | Thale cress | plasma membrane | 66.25 | 65.67 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 57.24 | 62.79 |
| Bra028247.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 57.42 | 62.74 |
| CDX74457 | Canola | cytosol | 57.24 | 62.55 |
| CDX74455 | Canola | cytosol, plasma membrane | 47.35 | 59.16 |
| Bra028249.1-P | Field mustard | cytosol, plasma membrane | 50.35 | 58.16 |
| CDY30245 | Canola | extracellular | 10.6 | 56.07 |
| CDY71334 | Canola | cytosol | 7.24 | 54.67 |
| Bra028250.1-P | Field mustard | cytosol, plastid, vacuole | 45.94 | 54.28 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 48.23 | 54.17 |
| CDY30242 | Canola | cytosol | 49.47 | 53.85 |
| AT5G39450.1 | Thale cress | extracellular, plasma membrane, plastid | 54.77 | 53.54 |
| CDX74454 | Canola | cytosol | 40.11 | 50.67 |
| CDY15950 | Canola | extracellular | 14.13 | 47.9 |
| CDX99665 | Canola | extracellular | 13.43 | 46.91 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 47.7 | 43.27 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 44.7 | 40.74 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 44.7 | 40.74 |
| PGSC0003DMT400024153 | Potato | cytosol | 42.58 | 38.38 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 42.58 | 38.38 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 37.46 | 38.2 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 35.34 | 37.59 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 33.04 | 35.15 |
| Zm00001d049737_P001 | Maize | cytosol | 34.81 | 34.81 |
| KXG24173 | Sorghum | cytosol | 34.45 | 34.7 |
| Os08t0105100-01 | Rice | cytosol | 33.92 | 34.47 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 33.39 | 34.3 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 33.22 | 34.12 |
| AT5G39470.1 | Thale cress | extracellular | 10.25 | 34.12 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 32.86 | 33.76 |
| KRH53935 | Soybean | endoplasmic reticulum | 44.17 | 21.95 |
Protein Annotations
| MapMan:35.1 | EntrezGene:833945 | ProteinID:AED94439.1 | ArrayExpress:AT5G39490 | EnsemblPlantsGene:AT5G39490 | RefSeq:AT5G39490 |
| TAIR:AT5G39490 | RefSeq:AT5G39490-TAIR-G | EnsemblPlants:AT5G39490.1 | TAIR:AT5G39490.1 | Unigene:At.65607 | ProteinID:BAB11023.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | RefSeq:NP_198765.1 | PFscan:PS50181 | PANTHER:PTHR31370 | UniProt:Q9FLY7 | SUPFAM:SSF81383 |
| UniParc:UPI00000A174D | SEG:seg | : | : | : | : |
Description
Probable F-box protein At5g39490 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY7]
Coordinates
chr5:-:15805808..15807508
Molecular Weight (calculated)
64387.9 Da
IEP (calculated)
6.451
GRAVY (calculated)
-0.171
Length
566 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTELFGACL LLMLPEDIFV VISRFLSPSD ICNLILCGKS LRALVDSEKT WLVQCEEVKV LPLLEIVQWR IGISSYKALC RFLVEVVKPL LGIWVQQNPE
101: LGNVVYVMPG FLSVVGCRII PQKVAPSWIQ EDRVKWSPVF EIICGFDGSN GFFLHGRDKE GSCLYPGFVM GIEKNCDVLQ LEVVPRQEKS SCNEIERGAS
201: RKEGEIPFWM LAFSDRKHLL NIVTNHVGLH VVEPLNEMLF PTLKDDEVKL NERRTILLKM HKFGGNWKNM NLEEDGQLSY NPMQVKINEM LENLDDDFFF
301: ELHEDLIEVT PTESTYVLRK SSSSKNTTPS QSEIRHSNRK SFLSSGDTFG LGLKASYTEM SYYKGWPDMY VHHFLLYKLP VKKAVDHETY AGLWGGTFGW
401: PAGKCPKGKT EKSLYLLMLT YEKEYSERVL IGTKILEGNR LVSRPNGTTM FVVKIDTPSL EPFPVDADEI HFENSYSGKG VTDGYGFRYL GSKPGSLFVI
501: TNDFLAFVWK DTKTMITLHR LNLTEILKKG LGSCVPPSHP MKNFTYMRTS SMNEFTSSST DLCYSD
101: LGNVVYVMPG FLSVVGCRII PQKVAPSWIQ EDRVKWSPVF EIICGFDGSN GFFLHGRDKE GSCLYPGFVM GIEKNCDVLQ LEVVPRQEKS SCNEIERGAS
201: RKEGEIPFWM LAFSDRKHLL NIVTNHVGLH VVEPLNEMLF PTLKDDEVKL NERRTILLKM HKFGGNWKNM NLEEDGQLSY NPMQVKINEM LENLDDDFFF
301: ELHEDLIEVT PTESTYVLRK SSSSKNTTPS QSEIRHSNRK SFLSSGDTFG LGLKASYTEM SYYKGWPDMY VHHFLLYKLP VKKAVDHETY AGLWGGTFGW
401: PAGKCPKGKT EKSLYLLMLT YEKEYSERVL IGTKILEGNR LVSRPNGTTM FVVKIDTPSL EPFPVDADEI HFENSYSGKG VTDGYGFRYL GSKPGSLFVI
501: TNDFLAFVWK DTKTMITLHR LNLTEILKKG LGSCVPPSHP MKNFTYMRTS SMNEFTSSST DLCYSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.