Factsheet for Bra028247.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, plasma membrane, mitochondrion

Predictor Summary:

plastid 3
nucleus 1
cytosol 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74457	Canola	cytosol	99.03	99.03
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	70.27	75.99
Bra028249.1-P	Field mustard	cytosol, plasma membrane	62.55	66.12
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	63.9	58.27
AT5G39460.1	Thale cress	plasma membrane	63.71	57.79
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	62.74	57.42
Bra028246.1-P	Field mustard	vacuole	62.36	56.87
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	52.9	43.91
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	50.58	42.19
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	50.39	42.03
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	49.61	40.92
PGSC0003DMT400024153	Potato	cytosol	49.42	40.76
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	41.12	40.04
GSMUA_Achr6P18710_001	Banana	cytosol	39.96	37.3
Os08t0105100-01	Rice	cytosol	39.38	36.62
Zm00001d049737_P001	Maize	cytosol	39.96	36.57
TraesCS7A01G324600.1	Wheat	cytosol	38.8	36.48
TraesCS7D01G320300.1	Wheat	cytosol	38.8	36.48
TraesCS7B01G225100.1	Wheat	cytosol	38.61	36.3
KXG24173	Sorghum	cytosol	39.19	36.12
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	35.91	34.96
AT5G39470.1	Thale cress	extracellular	10.23	31.18
KRH53935	Soybean	endoplasmic reticulum	50.39	22.91

Protein Annotations

EnsemblPlants:Bra028247.1	EnsemblPlants:Bra028247.1-P	EnsemblPlantsGene:Bra028247	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646
PFscan:PS50181	SUPFAM:SSF81383	UniParc:UPI000254496D	UniProt:M4EHI2	MapMan:35.1	:

Description

AT5G39460 (E=8e-101) | F-box family protein

Coordinates

chrA04:-:7093962..7095518

Molecular Weight (calculated)

58254.8 Da

IEP (calculated)

5.811

GRAVY (calculated)

-0.238

Length

518 amino acids

Sequence
(BLAST)

001: MMTIRELRSG KSVGGTCLLL SLPEDVFAAT SRFLSPSDIC NLSLCCKSLC DLVDYSEKIW RVQCEVVKVL SLSEIVQWRT GISSYKALCR FLVEVIKPLV
101: GVWVHQNPEL GNVVYVMSGF LSVIGCRIIP QEVGSLGIQE GRLMWSPVFE IVSDFDGSTK FFLHGRGREG SCVYPGSVTG IIDKTCNVLS LEVEPSQEKK
201: SGVPFQKLDD SDRRNLIESV TSHVGLLHES EPLNVKLFPT RREDEEGMLL ERRTMLLKMH KFGKNWKHMN LEEDGLCYNP TQVDINEMGA SPCVNLSSFL
301: SAGDTFGLSL KASYTEMSSY KGWPRMDLDR FCLHKLPIKS PGDDQEYAGL WGGTFGWPPG RCNEDETRHA FYLLMLSYEE SRKSNGKRLV GTKILEGTDY
401: VEHPNGTAMF VVDIDDTPSL EPFPFDADGR DFEHSYKGKG ISNGYGFRYP GSKPGSLYVI SDDHLAFVWH GTKDVFTLKR LDLDQIMKKG FGLWVPPLPP
501: VENFTYMETS YTNVFTKS

Best Arabidopsis Sequence Match ( AT5G39480.1 )
(BLAST)

001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLPALVDTEK MWLVQCEEVK VLPLLEIVQW RIGISSYKAL CRFLVEVVKP LLGIWVQQNP
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE

Arabidopsis Description

Putative F-box protein At5g39480 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY8]
SUBAcon: [extracellular,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.