Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G320300.1 | Wheat | cytosol | 97.64 | 97.64 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 97.46 | 97.46 |
| Os08t0105100-01 | Rice | cytosol | 76.22 | 75.4 |
| KXG24173 | Sorghum | cytosol | 74.05 | 72.6 |
| Zm00001d049737_P001 | Maize | cytosol | 72.96 | 71.02 |
| CDY30239 | Canola | cytosol, extracellular, plastid | 5.81 | 58.18 |
| CDX74458 | Canola | cytosol, extracellular, plastid | 5.63 | 56.36 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 48.09 | 49.81 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 48.82 | 48.47 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 47.73 | 42.15 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 46.64 | 41.38 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 46.46 | 41.22 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 39.75 | 41.17 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 46.82 | 41.08 |
| PGSC0003DMT400024153 | Potato | cytosol | 46.64 | 40.92 |
| Bra028246.1-P | Field mustard | vacuole | 41.38 | 40.14 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 36.84 | 39.34 |
| Bra028247.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 36.3 | 38.61 |
| CDX74457 | Canola | cytosol | 36.12 | 38.42 |
| AT5G39450.1 | Thale cress | extracellular, plasma membrane, plastid | 39.93 | 38.0 |
| CDX74455 | Canola | cytosol, plasma membrane | 31.22 | 37.97 |
| Bra028249.1-P | Field mustard | cytosol, plasma membrane | 32.49 | 36.53 |
| CDY71334 | Canola | cytosol | 4.9 | 36.0 |
| CDY30242 | Canola | cytosol | 33.39 | 35.38 |
| AT5G39460.1 | Thale cress | plasma membrane | 35.93 | 34.68 |
| CDX74459 | Canola | extracellular, vacuole | 21.78 | 34.48 |
| AT5G39480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 34.85 | 33.8 |
| CDY30238 | Canola | vacuole | 22.69 | 33.78 |
| AT5G39490.1 | Thale cress | extracellular, plasma membrane, vacuole | 33.76 | 32.86 |
| CDY30245 | Canola | extracellular | 6.35 | 32.71 |
| Bra028250.1-P | Field mustard | cytosol, plastid, vacuole | 27.95 | 32.15 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 29.22 | 31.94 |
| CDX74454 | Canola | cytosol | 25.77 | 31.7 |
| CDX99665 | Canola | extracellular | 9.07 | 30.86 |
| CDY15950 | Canola | extracellular | 9.07 | 29.94 |
| KRH53935 | Soybean | endoplasmic reticulum | 47.19 | 22.83 |
| AT5G39470.1 | Thale cress | extracellular | 5.63 | 18.24 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G225100.1 | EnsemblPlantsGene:TraesCS7B01G225100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31370 | PFscan:PS50181 | SEG:seg | SUPFAM:SSF81383 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:425473646..425476138
Molecular Weight (calculated)
60368.8 Da
IEP (calculated)
10.069
GRAVY (calculated)
-0.071
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDGAELIL SVPDDVLALI SAHLRPRDLL ALSAASRRLY AALSASDKSW LAQCRRLLPS SLSNLLAWRA AAGGSSLTVC RFLHSVSPLQ GLWAHQNPEL
101: GNLVAALPGF FSLVAVRAIP QELSPRLLWA PVFEILADAD GRPAFLFLHG HHPGSLFPGL LASVNPHANT LLLEAHAPVS SEPSAQFSRL SFGNRRRLLD
201: ALVASCRVML PPELAAAPLF ARSDEDLPML AARREAMLRL HIESSGGMVR RPELEALLGA KKVPPSLPVD SAGERVRLRR SLSAMAGYVR NGLRQMVTRS
301: ASANSRSEYA DSKHLALDEF LRASESTGLS LRGARLRLST YRAWPSMHDN RFALYKLTTQ VPMPGREYAG LWRGTFGWPP GRPDDERKPG KALFFLLLSY
401: EEDSEGKLLL IATKVLEGTH YVVHPNGSSM FVVRVGEAST EAFPWPTDED SRSVSIKRCF AGEGIATGYG FRYPGSKPGS LFVLRDGRLA FVWRDNKSVL
501: TLQRLDLEEL LRKGERVPTL PPIPNFAYLT KSYSNVFVAI HGSPSCSSSP R
101: GNLVAALPGF FSLVAVRAIP QELSPRLLWA PVFEILADAD GRPAFLFLHG HHPGSLFPGL LASVNPHANT LLLEAHAPVS SEPSAQFSRL SFGNRRRLLD
201: ALVASCRVML PPELAAAPLF ARSDEDLPML AARREAMLRL HIESSGGMVR RPELEALLGA KKVPPSLPVD SAGERVRLRR SLSAMAGYVR NGLRQMVTRS
301: ASANSRSEYA DSKHLALDEF LRASESTGLS LRGARLRLST YRAWPSMHDN RFALYKLTTQ VPMPGREYAG LWRGTFGWPP GRPDDERKPG KALFFLLLSY
401: EEDSEGKLLL IATKVLEGTH YVVHPNGSSM FVVRVGEAST EAFPWPTDED SRSVSIKRCF AGEGIATGYG FRYPGSKPGS LFVLRDGRLA FVWRDNKSVL
501: TLQRLDLEEL LRKGERVPTL PPIPNFAYLT KSYSNVFVAI HGSPSCSSSP R
001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
Arabidopsis Description
F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]
SUBAcon: [plasma membrane,plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.