CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74455	Canola	cytosol, plasma membrane	83.65	96.03
Bra028249.1-P	Field mustard	cytosol, plasma membrane	82.5	87.55
CDY71334	Canola	cytosol	11.35	78.67
CDY30245	Canola	extracellular	13.85	67.29
CDY30240	Canola	cytosol, extracellular, vacuole	62.12	62.6
CDX74457	Canola	cytosol	62.12	62.36
CDY30239	Canola	cytosol, extracellular, plastid	6.54	61.82
CDX74458	Canola	cytosol, extracellular, plastid	6.35	60.0
CDX99665	Canola	extracellular	15.96	51.23
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	54.42	49.82
CDY30244	Canola	cytosol, plasma membrane, plastid	48.08	49.6
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	53.85	49.47
CDY15950	Canola	extracellular	15.77	49.1
AT5G39460.1	Thale cress	plasma membrane	53.85	49.04
CDX74454	Canola	cytosol	40.77	47.32
CDY30238	Canola	vacuole	32.12	45.14
CDX74459	Canola	extracellular, vacuole	27.88	41.67
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	45.58	38.16
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	44.81	37.52
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	44.81	37.34
GSMUA_Achr6P18710_001	Banana	cytosol	37.69	35.32
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	35.96	35.15
PGSC0003DMT400024153	Potato	cytosol	42.31	35.03
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	42.12	34.87
TraesCS7D01G320300.1	Wheat	cytosol	35.77	33.76
TraesCS7A01G324600.1	Wheat	cytosol	35.77	33.76
KXG24173	Sorghum	cytosol	36.15	33.45
TraesCS7B01G225100.1	Wheat	cytosol	35.38	33.39
Zm00001d049737_P001	Maize	cytosol	35.58	32.69
Os08t0105100-01	Rice	cytosol	34.81	32.5
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	31.35	30.64
AT5G39470.1	Thale cress	extracellular	7.69	23.53
KRH53935	Soybean	endoplasmic reticulum	43.08	19.67

Protein Annotations

EnsemblPlants:CDY30242	EnsemblPlantsGene:GSBRNA2T00044871001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
PANTHER:PTHR31370	ProteinID:CDY30242	ProteinID:CDY30242.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EE0CE7
UniProt:A0A078GYB9	MapMan:35.1	:	:	:	:

Description

BnaC04g31530DBnaC04g31530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYB9]

Coordinates

chrLK032251:+:10781..13246

Molecular Weight (calculated)

59474.8 Da

IEP (calculated)

4.990

GRAVY (calculated)

-0.333

Length

520 amino acids

Sequence
(BLAST)

001: MREKQELLRG VNAVAANMFT LLIEWKQKLD AVENTEKRTA KERKLWPLLS SVLEDITVLM FRLLSPRDIC NLSFCCKSLC DIENSENVWL DQCEIVKVIP
101: SSEIVKWRTG VSSYKSLCRF LVEVIKPLAG VWVYHEPDLG DVVYVMPGFL SVVGCRIIPQ EVGPLGIQEG RIMWSPVFEI ICGFDGSTKF FLHGRDRKHS
201: CLYPGLVTVI EKSCNVLSLE VEPRLEKTSS KASRQGREDE GMLLERRTDG LFYNPKQVDI NEMWEKNRCV YFEYIATDEE RDIRYLNRQA FSSGDTFGLS
301: LKGSYTDVFS HLGWPNINGD NFSLYKLPVN NPMNDQEEYA GLWGGTFGWP PGRCDEDETR NAFYLLMLSY EKSEKNNGKR LIGTKILEGN DYVDRPNGTA
401: MFVVDIDTLS LEPFPLDADG RDFEHSYTGR GISDGYGFRY PGSKPGSLYV ISDDHFAFVW HETKHVFTLK RVNLEEILKK GLGMCVPPLP PINNFTYMGR
501: SYTNVFTESW FYSSSSDSDE

Best Arabidopsis Sequence Match ( AT5G39480.1 )
(BLAST)

001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLPALVDTEK MWLVQCEEVK VLPLLEIVQW RIGISSYKAL CRFLVEVVKP LLGIWVQQNP
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE

Arabidopsis Description

Putative F-box protein At5g39480 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY8]
SUBAcon: [plasma membrane,extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.