Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15950 | Canola | extracellular | 78.4 | 76.05 |
| CDY30245 | Canola | extracellular | 20.37 | 30.84 |
| CDX74459 | Canola | extracellular, vacuole | 43.21 | 20.11 |
| CDY30238 | Canola | vacuole | 43.21 | 18.92 |
| CDX74455 | Canola | cytosol, plasma membrane | 51.85 | 18.54 |
| CDX74454 | Canola | cytosol | 48.15 | 17.41 |
| CDY30242 | Canola | cytosol | 51.23 | 15.96 |
| CDX74457 | Canola | cytosol | 50.0 | 15.64 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 49.38 | 15.5 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 48.15 | 15.48 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 45.68 | 13.91 |
| AT5G39480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 48.77 | 13.91 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 52.47 | 13.62 |
| AT5G39460.1 | Thale cress | plasma membrane | 47.53 | 13.49 |
| AT5G39490.1 | Thale cress | extracellular, plasma membrane, vacuole | 46.91 | 13.43 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 49.38 | 12.88 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 48.77 | 12.72 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 42.59 | 12.43 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 40.12 | 12.22 |
| PGSC0003DMT400024153 | Potato | cytosol | 45.68 | 11.78 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 45.68 | 11.78 |
| Os08t0105100-01 | Rice | cytosol | 32.1 | 9.34 |
| KXG24173 | Sorghum | cytosol | 32.1 | 9.25 |
| Zm00001d049737_P001 | Maize | cytosol | 32.1 | 9.19 |
| CDY30239 | Canola | cytosol, extracellular, plastid | 3.09 | 9.09 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 30.86 | 9.07 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 30.86 | 9.07 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 30.86 | 9.07 |
| CDX74458 | Canola | cytosol, extracellular, plastid | 2.47 | 7.27 |
| KRH53935 | Soybean | endoplasmic reticulum | 49.38 | 7.02 |
| AT5G39470.1 | Thale cress | extracellular | 5.56 | 5.29 |
| CDY71334 | Canola | cytosol | 1.23 | 2.67 |
Protein Annotations
| EnsemblPlants:CDX99665 | EnsemblPlantsGene:GSBRNA2T00108181001 | ncoils:Coil | PANTHER:PTHR31370 | PFscan:PS51257 | ProteinID:CDX99665 |
| ProteinID:CDX99665.1 | UniParc:UPI0004EE86A6 | MapMan:35.1 | : | : | : |
Description
BnaC04g34220D
Coordinates
chrLK031912:+:738008..738706
Molecular Weight (calculated)
18050.5 Da
IEP (calculated)
6.754
GRAVY (calculated)
-0.260
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPLIGVWVN QVPELGNVVY VMPGFLSVVG CRIIPQEGGP LGIQEGRITW SPVFEIISGF DGSTKFFLHG RGKGGCLLYP GSVTGIEKSC NNQMHKYGRY
101: WENMNLEDDE FCYNLAQGDL NKNWEKSSAY FHGGCVARQS FISSGDKFSF YSEESLSRVA KN
101: WENMNLEDDE FCYNLAQGDL NKNWEKSSAY FHGGCVARQS FISSGDKFSF YSEESLSRVA KN
001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
Arabidopsis Description
F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [extracellular,plasma membrane,plastid]
SUBAcon: [extracellular,plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.