Factsheet for PGSC0003DMT400024153

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	97.61	97.61
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	65.29	65.71
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	56.85	57.49
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	56.05	56.68
CDY30245	Canola	extracellular	8.92	52.34
CDY30239	Canola	cytosol, extracellular, plastid	4.46	50.91
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	42.99	50.75
CDY30240	Canola	cytosol, extracellular, vacuole	40.76	49.61
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	40.76	49.42
Bra028246.1-P	Field mustard	vacuole	44.59	49.3
CDX74457	Canola	cytosol	40.61	49.23
CDX74458	Canola	cytosol, extracellular, plastid	4.3	49.09
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	44.75	48.53
GSMUA_Achr6P18710_001	Banana	cytosol	42.83	48.47
CDY30238	Canola	vacuole	28.34	48.11
CDX74455	Canola	cytosol, plasma membrane	34.08	47.24
TraesCS7B01G225100.1	Wheat	cytosol	40.92	46.64
CDX74459	Canola	extracellular, vacuole	25.8	46.55
TraesCS7D01G320300.1	Wheat	cytosol	40.61	46.28
TraesCS7A01G324600.1	Wheat	cytosol	40.13	45.73
Bra028249.1-P	Field mustard	cytosol, plasma membrane	35.67	45.71
CDX99665	Canola	extracellular	11.78	45.68
Os08t0105100-01	Rice	cytosol	40.29	45.42
KXG24173	Sorghum	cytosol	39.81	44.48
CDY15950	Canola	extracellular	11.78	44.31
CDY71334	Canola	cytosol	5.25	44.0
AT5G39460.1	Thale cress	plasma membrane	39.97	43.96
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	39.33	43.49
Zm00001d049737_P001	Maize	cytosol	39.17	43.46
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	32.64	42.8
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	38.38	42.58
CDY30242	Canola	cytosol	35.03	42.31
CDX74454	Canola	cytosol	29.62	41.52
CDY30244	Canola	cytosol, plasma membrane, plastid	32.8	40.87
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	34.55	40.79
KRH53935	Soybean	endoplasmic reticulum	59.71	32.92
AT5G39470.1	Thale cress	extracellular	6.53	24.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400024153	EnsemblPlantsGene:PGSC0003DMG400009336	EntrezGene:102600394	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646
PFscan:PS50181	PGSC:PGSC0003DMG400009336	RefSeq:XP_006338037.1	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000296946D
UniProt:M1AJJ1	MapMan:35.1	:	:	:	:

Description

F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009336]

Coordinates

chr4:-:65186048..65189121

Molecular Weight (calculated)

69684.6 Da

IEP (calculated)

8.251

GRAVY (calculated)

-0.248

Length

628 amino acids

Sequence
(BLAST)

001: MCGSGTTTTT MLPEVCGSSF LLSLPDDVFA IVSRSLSPRD VCNLGLCCRN LHDLAASEKV WLSQCEMLGV VPYRDVIEWR KGVCSYKALC HFLVSIKPLL
101: GIWVHQNPEL GNVVYVMPGF ISAVGCRIIP QELGPLGLED SPILWSPVFE VVSDFEGSAA FFLHGRENGT DYVYPGSLKK VERTCNVLLL EVEPQQYTSG
201: GKLFHSKSFI HPSENEASRK ICRSNSGVSV SEKVTEQRAT TVPFGRLAFA DRRKLLDTVT NQVRQTLPDA KDAILFPRLR REEADLRENM KLLYERRLLF
301: MQMYDGGGGF TVWKAGSELP LHPSPVGLSE FRQNLDLISG CHASQTATDH ESRSRKSLAG YVKHSLKYIL KKSNSINGKR DLLGKNSSGH GSKHAQLHEF
401: LQPGDAIGLT LHASTVKLSS YRAWPNMHES KYALYKLPMR APEVGQEYAG VWGGTFGWPP GRPSDDKPGK ALFLLLLSYE ESQGQKLLIA TKILEGTHYV
501: LHPNGSAMFI VNIEEPSNDP FPWCTDGHDS NPVDVKHAFT GEGIANGYGF RYPGSKPGSL FVIHDKMLAF IWKESRSVLA LQRLDLQEVL SKGERIPALP
601: PVSNFAYLTR SYSNVFANGL TSPRQNHP

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.