CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99665	Canola	extracellular	76.05	78.4
CDY30245	Canola	extracellular	19.76	30.84
CDX74459	Canola	extracellular, vacuole	42.52	20.4
CDY30238	Canola	vacuole	44.91	20.27
CDX74454	Canola	cytosol	50.3	18.75
CDX74455	Canola	cytosol, plasma membrane	49.7	18.32
CDY30244	Canola	cytosol, plasma membrane, plastid	50.3	16.67
CDX74457	Canola	cytosol	50.3	16.22
CDY30240	Canola	cytosol, extracellular, vacuole	49.7	16.09
CDY30242	Canola	cytosol	49.1	15.77
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	48.5	14.26
AT5G39460.1	Thale cress	plasma membrane	48.5	14.19
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	47.9	14.13
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	50.3	13.46
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	41.92	13.16
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	46.71	12.56
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	46.71	12.56
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	39.52	12.41
GSMUA_Achr6P18710_001	Banana	cytosol	40.72	12.25
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	44.31	11.78
PGSC0003DMT400024153	Potato	cytosol	44.31	11.78
Zm00001d049737_P001	Maize	cytosol	31.74	9.36
Os08t0105100-01	Rice	cytosol	31.14	9.34
KXG24173	Sorghum	cytosol	31.14	9.25
CDY30239	Canola	cytosol, extracellular, plastid	2.99	9.09
TraesCS7D01G320300.1	Wheat	cytosol	29.94	9.07
TraesCS7A01G324600.1	Wheat	cytosol	29.94	9.07
TraesCS7B01G225100.1	Wheat	cytosol	29.94	9.07
CDX74458	Canola	cytosol, extracellular, plastid	2.4	7.27
KRH53935	Soybean	endoplasmic reticulum	49.1	7.2
AT5G39470.1	Thale cress	extracellular	5.39	5.29
CDY71334	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY15950	EnsemblPlantsGene:GSBRNA2T00090327001	PANTHER:PTHR31370	PFscan:PS51257	ProteinID:CDY15950	ProteinID:CDY15950.1
UniParc:UPI0004EE7323	UniProt:A0A078FND2	MapMan:35.1	:	:	:

Description

BnaA04g11610DBnaA04g11610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FND2]

Coordinates

chrLK032059:+:686926..687639

Molecular Weight (calculated)

18537.2 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.122

Length

167 amino acids

Sequence
(BLAST)

001: MKPLIGVWVN QVPELGNVVY VMPGFLSVVG CRIIPQEGGP LGIQEGRITW SPVFEIISGF DGSTKFFLHG RGKGGCLLYP GPVTGIEKSC NNQMHKFGRY
101: WENMNLEDDE FCYNLAQGDL NKNWEKSSAY FHGGCVACQS FISSGDTFFL SLKAFYSEES LSRVAKN

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.