Factsheet for Os08t0105100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G225100.1	Wheat	cytosol	75.4	76.22
TraesCS7A01G324600.1	Wheat	cytosol	75.22	76.04
TraesCS7D01G320300.1	Wheat	cytosol	75.04	75.86
KXG24173	Sorghum	cytosol	73.79	73.13
Zm00001d049737_P001	Maize	cytosol	72.71	71.55
CDY30239	Canola	cytosol, extracellular, plastid	5.39	54.55
CDX74458	Canola	cytosol, extracellular, plastid	5.21	52.73
GSMUA_Achr6P18710_001	Banana	cytosol	49.91	50.09
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	47.58	49.81
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	46.5	41.51
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	45.06	40.42
PGSC0003DMT400024153	Potato	cytosol	45.42	40.29
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	44.7	40.1
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	45.06	39.97
CDY30240	Canola	cytosol, extracellular, vacuole	36.98	39.92
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	37.88	39.66
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	36.62	39.38
CDX74457	Canola	cytosol	36.62	39.38
Bra028246.1-P	Field mustard	vacuole	39.86	39.08
CDY71334	Canola	cytosol	5.21	38.67
CDX74455	Canola	cytosol, plasma membrane	31.06	38.19
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	38.96	37.48
Bra028249.1-P	Field mustard	cytosol, plasma membrane	32.32	36.73
CDX74459	Canola	extracellular, vacuole	22.26	35.63
CDY30245	Canola	extracellular	6.82	35.51
CDY30238	Canola	vacuole	23.34	35.14
CDY30242	Canola	cytosol	32.5	34.81
AT5G39460.1	Thale cress	plasma membrane	35.55	34.68
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	35.19	34.51
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	34.47	33.92
CDX74454	Canola	cytosol	26.57	33.04
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	28.37	32.99
CDY30244	Canola	cytosol, plasma membrane, plastid	29.44	32.54
CDX99665	Canola	extracellular	9.34	32.1
CDY15950	Canola	extracellular	9.34	31.14
KRH53935	Soybean	endoplasmic reticulum	45.42	22.21
AT5G39470.1	Thale cress	extracellular	5.75	18.82

Protein Annotations

EMBL:AK069415	EnsemblPlants:Os08t0105100-01	EnsemblPlantsGene:Os08g0105100	EntrezGene:4344444	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646
PFscan:PS50181	ProteinID:BAD08932.1	ProteinID:BAF22698.1	ProteinID:BAT03440.1	RefSeq:XP_015648405.1	SEG:seg
SUPFAM:SSF81383	UniParc:UPI000023AC72	UniProt:Q6ZJM8	MapMan:35.1	:	:

Description

F-box protein 403Cyclin-like F-box domain containing protein. (Os08t0105100-01)

Coordinates

chr8:-:278146..281347

Molecular Weight (calculated)

61100.6 Da

IEP (calculated)

10.089

GRAVY (calculated)

-0.060

Length

557 amino acids

Sequence
(BLAST)

001: MTSDELAGEG EVDGAELILS LPEDVLGLIS AHLRPRDLLA LSAASRSLRN AVSTADKAWL AQCRRLLPTA SHLLAWRTAL AHSSLAVCRF LHSAAPLLGL
101: WAHQNPELGN LVLALPGFLS LVAVRSIPQE LSPRLLWAPV FELLADHRGH PAFLFLHGAA HDSLFPGLLS SSLHPLANTL FLEAHTSTST SHFSRLAFAD
201: RRRLLNALVA ASRLTLPPDV ATAPLFARSD ADLPLLAARR EAMLRLHSQS GGGMVRRAEI EALLIGARKT AALPADTAGD KMRLRRTFSV VAGFVRNSLR
301: QMVTRSASAN SRAEYAHPKH LPLDEFLRAG ESVGLSLRGA RMRLSIYRNW PSMHDNRFVL YKLTTQAPMP GREYAGLWGG TFGWPPGRPE DERKPGKALF
401: FLLLSYEEDS EGKLQLIATK VLEGTHYVVH PNGSSMFIVR VGEPSTETFP WQTDEESRAV EINRSFAGEG IATGYGFRYP GSKPGSLFVL LDGRLAFVWR
501: ENKAVLTLQR LDLEDMIRRG ERVPSLPPIP NFAYLTKSYS NVFAVAPGST SFPASPR

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.