CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049737_P001	Maize	cytosol	90.04	89.4
TraesCS7B01G225100.1	Wheat	cytosol	72.6	74.05
Os08t0105100-01	Rice	cytosol	73.13	73.79
TraesCS7A01G324600.1	Wheat	cytosol	72.06	73.5
TraesCS7D01G320300.1	Wheat	cytosol	71.89	73.32
CDY30239	Canola	cytosol, extracellular, plastid	6.23	63.64
CDX74458	Canola	cytosol, extracellular, plastid	6.05	61.82
GSMUA_Achr6P18710_001	Banana	cytosol	49.29	49.91
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	47.15	49.81
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	47.51	42.79
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	45.2	40.9
Bra028246.1-P	Field mustard	vacuole	41.28	40.85
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	44.66	40.42
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	44.84	40.13
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	37.9	40.04
PGSC0003DMT400024153	Potato	cytosol	44.48	39.81
CDY30240	Canola	cytosol, extracellular, vacuole	36.3	39.53
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	40.39	39.21
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	36.12	39.19
CDX74457	Canola	cytosol	35.94	39.0
CDX74455	Canola	cytosol, plasma membrane	31.32	38.85
CDY71334	Canola	cytosol	5.16	38.67
Bra028249.1-P	Field mustard	cytosol, plasma membrane	32.92	37.76
CDY30245	Canola	extracellular	6.94	36.45
CDY30242	Canola	cytosol	33.45	36.15
AT5G39460.1	Thale cress	plasma membrane	36.48	35.9
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	36.12	35.74
CDX74459	Canola	extracellular, vacuole	21.71	35.06
CDY30238	Canola	vacuole	22.95	34.86
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	34.7	34.45
CDX99665	Canola	extracellular	9.25	32.1
CDY30244	Canola	cytosol, plasma membrane, plastid	28.29	31.55
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	26.69	31.32
CDY15950	Canola	extracellular	9.25	31.14
CDX74454	Canola	cytosol	24.73	31.03
KRH53935	Soybean	endoplasmic reticulum	45.55	22.48
AT5G39470.1	Thale cress	extracellular	5.52	18.24

Protein Annotations

EnsemblPlants:KXG24173	EnsemblPlantsGene:SORBI_3007G004100	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646	PFscan:PS50181
ProteinID:KXG24173	ProteinID:KXG24173.2	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000B426698
UniProt:A0A1B6PER0	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:384870..387959

Molecular Weight (calculated)

61314.8 Da

IEP (calculated)

9.705

GRAVY (calculated)

-0.117

Length

562 amino acids

Sequence
(BLAST)

001: MLAAAGRDGA DLILSLPEDV LALISAHLRP RDLLALSAAS RRLRRALSAD KAWLAQCRRL LPSPAHLLAW RAAAAGDSLA VCRFLHSAAP LLGLWAHQNP
101: ELGNLVAAVP GFLSVVAARA IPQELSPRLR WAPVFELLAD DHGRPALLFL HGHHHAHLFP GLLASLQPHA NVIFLEAHTA RDPLASSSSS SSSSCPQCFA
201: RLSFGDRRRL LDSLVAACRI TLPPDLVDAP LFACSDDDLP LLAKRREAML RLHREAAGGM VRTPEVQGLL LEAKKKAATT PSPTDGGRRI PLRRSLSAVA
301: GYFRNGLRQM VTRSASANSR TDYVDAKHLA LSDFLHDGES VGLSLRGARM RLSTYRAWPS MHDNRFALYK LTVQTPMPGR EYAGLWGGTF GWPPGRPSDE
401: CKPKKALFFL LLSYEEDSEG KLQLIATKVL EGTHYVVHPN GSSMFIARMG EQSTEPFPWQ TDGESRNVDV ERGFAGEGIA NGYGFRYPGS KPGSLFVLQD
501: GLLAFVWKET GAVLTLQRLD LEELLKKGER VPALQPVPNF AYLTKSYSNV FTGFPGSSAS PR

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.