Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY30239 | Canola | cytosol, extracellular, plastid | 7.25 | 76.36 |
CDX74458 | Canola | cytosol, extracellular, plastid | 7.08 | 74.55 |
Bra028246.1-P | Field mustard | vacuole | 67.7 | 69.01 |
CDY30238 | Canola | vacuole | 40.24 | 62.97 |
AT5G39460.1 | Thale cress | plasma membrane | 58.89 | 59.72 |
CDX74459 | Canola | extracellular, vacuole | 35.23 | 58.62 |
AT5G39480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 56.48 | 57.57 |
AT5G39490.1 | Thale cress | extracellular, plasma membrane, vacuole | 53.54 | 54.77 |
VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 53.2 | 49.36 |
KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 50.6 | 47.18 |
KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 49.22 | 45.89 |
PGSC0003DMT400024153 | Potato | cytosol | 48.53 | 44.75 |
Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 48.19 | 44.43 |
GSMUA_Achr6P18710_001 | Banana | cytosol | 41.8 | 43.6 |
GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 39.9 | 43.42 |
TraesCS7A01G324600.1 | Wheat | cytosol | 38.51 | 40.47 |
KXG24173 | Sorghum | cytosol | 39.21 | 40.39 |
TraesCS7D01G320300.1 | Wheat | cytosol | 38.34 | 40.29 |
TraesCS7B01G225100.1 | Wheat | cytosol | 38.0 | 39.93 |
Zm00001d049737_P001 | Maize | cytosol | 38.86 | 39.75 |
Os08t0105100-01 | Rice | cytosol | 37.48 | 38.96 |
GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 35.58 | 38.72 |
AT5G39470.1 | Thale cress | extracellular | 9.15 | 31.18 |
KRH53935 | Soybean | endoplasmic reticulum | 50.78 | 25.81 |
Protein Annotations
Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:833941 | ProteinID:AED94434.1 | ArrayExpress:AT5G39450 | EnsemblPlantsGene:AT5G39450 |
RefSeq:AT5G39450 | TAIR:AT5G39450 | RefSeq:AT5G39450-TAIR-G | EnsemblPlants:AT5G39450.1 | TAIR:AT5G39450.1 | EMBL:AY093164 |
Unigene:At.30345 | ProteinID:BAB11018.1 | EMBL:BT008911 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_198761.2 | PFAM:PF00646 |
PO:PO:0000293 | PFscan:PS50181 | PANTHER:PTHR31370 | UniProt:Q8RWD6 | SMART:SM00256 | SUPFAM:SSF81383 |
UniParc:UPI000009D0B5 | SEG:seg | : | : | : | : |
Description
F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
Coordinates
chr5:+:15785717..15788150
Molecular Weight (calculated)
65178.1 Da
IEP (calculated)
7.844
GRAVY (calculated)
-0.149
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.