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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30239 Canola cytosol, extracellular, plastid 7.25 76.36
CDX74458 Canola cytosol, extracellular, plastid 7.08 74.55
Bra028246.1-P Field mustard vacuole 67.7 69.01
CDY30238 Canola vacuole 40.24 62.97
AT5G39460.1 Thale cress plasma membrane 58.89 59.72
CDX74459 Canola extracellular, vacuole 35.23 58.62
AT5G39480.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 56.48 57.57
AT5G39490.1 Thale cress extracellular, plasma membrane, vacuole 53.54 54.77
VIT_07s0031g02420.t01 Wine grape endoplasmic reticulum, extracellular 53.2 49.36
KRH40957 Soybean cytosol, endoplasmic reticulum, vacuole 50.6 47.18
KRH59601 Soybean endoplasmic reticulum, extracellular, plasma membrane 49.22 45.89
PGSC0003DMT400024153 Potato cytosol 48.53 44.75
Solyc04g076520.1.1 Tomato cytosol, nucleus, plasma membrane 48.19 44.43
GSMUA_Achr6P18710_001 Banana cytosol 41.8 43.6
GSMUA_Achr4P16390_001 Banana cytosol, nucleus, plasma membrane 39.9 43.42
TraesCS7A01G324600.1 Wheat cytosol 38.51 40.47
KXG24173 Sorghum cytosol 39.21 40.39
TraesCS7D01G320300.1 Wheat cytosol 38.34 40.29
TraesCS7B01G225100.1 Wheat cytosol 38.0 39.93
Zm00001d049737_P001 Maize cytosol 38.86 39.75
Os08t0105100-01 Rice cytosol 37.48 38.96
GSMUA_Achr8P32580_001 Banana endoplasmic reticulum 35.58 38.72
AT5G39470.1 Thale cress extracellular 9.15 31.18
KRH53935 Soybean endoplasmic reticulum 50.78 25.81
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1EntrezGene:833941ProteinID:AED94434.1ArrayExpress:AT5G39450EnsemblPlantsGene:AT5G39450
RefSeq:AT5G39450TAIR:AT5G39450RefSeq:AT5G39450-TAIR-GEnsemblPlants:AT5G39450.1TAIR:AT5G39450.1EMBL:AY093164
Unigene:At.30345ProteinID:BAB11018.1EMBL:BT008911InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0008150InterPro:IPR001810RefSeq:NP_198761.2PFAM:PF00646
PO:PO:0000293PFscan:PS50181PANTHER:PTHR31370UniProt:Q8RWD6SMART:SM00256SUPFAM:SSF81383
UniParc:UPI000009D0B5SEG:seg::::
Description
F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
Coordinates
chr5:+:15785717..15788150
Molecular Weight (calculated)
65178.1 Da
IEP (calculated)
7.844
GRAVY (calculated)
-0.149
Length
579 amino acids
Sequence
(BLAST)
001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.