Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30245 | Canola | extracellular | 21.76 | 34.58 |
| AT5G39460.1 | Thale cress | plasma membrane | 35.88 | 10.68 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 32.35 | 10.66 |
| CDX74457 | Canola | cytosol | 31.76 | 10.42 |
| AT5G39490.1 | Thale cress | extracellular, plasma membrane, vacuole | 34.12 | 10.25 |
| Bra028247.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 31.18 | 10.23 |
| AT5G39480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 34.12 | 10.21 |
| Bra028250.1-P | Field mustard | cytosol, plastid, vacuole | 27.65 | 9.81 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 28.82 | 9.72 |
| AT5G39450.1 | Thale cress | extracellular, plasma membrane, plastid | 31.18 | 9.15 |
| CDX74454 | Canola | cytosol | 21.18 | 8.04 |
| CDY30242 | Canola | cytosol | 23.53 | 7.69 |
| CDX74455 | Canola | cytosol, plasma membrane | 19.41 | 7.28 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 25.88 | 7.09 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 25.88 | 7.05 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 25.29 | 6.92 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 21.18 | 6.77 |
| Bra028249.1-P | Field mustard | cytosol, plasma membrane | 19.41 | 6.73 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 24.71 | 6.69 |
| PGSC0003DMT400024153 | Potato | cytosol | 24.12 | 6.53 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 20.0 | 6.13 |
| Os08t0105100-01 | Rice | cytosol | 18.82 | 5.75 |
| Zm00001d049737_P001 | Maize | cytosol | 18.82 | 5.65 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 17.65 | 5.64 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 18.24 | 5.63 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 18.24 | 5.63 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 18.24 | 5.63 |
| CDX99665 | Canola | extracellular | 5.29 | 5.56 |
| KXG24173 | Sorghum | cytosol | 18.24 | 5.52 |
| CDY15950 | Canola | extracellular | 5.29 | 5.39 |
| KRH53935 | Soybean | endoplasmic reticulum | 25.29 | 3.78 |
| CDY71334 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | EntrezGene:833943 | EMBL:AB009054 | ProteinID:AED94436.1 | ArrayExpress:AT5G39470 | EnsemblPlantsGene:AT5G39470 |
| RefSeq:AT5G39470 | TAIR:AT5G39470 | RefSeq:AT5G39470-TAIR-G | EnsemblPlants:AT5G39470.1 | TAIR:AT5G39470.1 | Unigene:At.55255 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | RefSeq:NP_198763.1 | PFscan:PS50181 | PANTHER:PTHR31370 | UniProt:Q3E8K6 | SUPFAM:SSF81383 |
| UniParc:UPI00001627BB | : | : | : | : | : |
Description
Putative F-box protein At5g39470 [Source:UniProtKB/Swiss-Prot;Acc:Q3E8K6]
Coordinates
chr5:-:15791952..15793062
Molecular Weight (calculated)
18995.1 Da
IEP (calculated)
5.182
GRAVY (calculated)
0.361
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLARLIFQA TIYPIWLDKT EASDISKLAT QFGTLRLIDE AISGKLASYT SYEHLQLEAL IAWFHHLQPK FENNLNENTS KSALSSEFCK VGACLLLTLP
101: EDVFSVISHF LSPSDICDII FCCKSLCALV DSEKTWLVQY EVVKVVKPLV GIWVQKNPVI GISYPLLDAG
101: EDVFSVISHF LSPSDICDII FCCKSLCALV DSEKTWLVQY EVVKVVKPLV GIWVQKNPVI GISYPLLDAG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.