Factsheet for Bra028250.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74454	Canola	cytosol	90.61	96.88
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	75.99	70.27
Bra028249.1-P	Field mustard	cytosol, plasma membrane	50.94	49.8
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	54.91	46.3
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	54.28	45.94
AT5G39460.1	Thale cress	plasma membrane	54.07	45.36
Bra028246.1-P	Field mustard	vacuole	52.61	44.37
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	46.56	35.74
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	44.26	34.14
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	43.63	33.66
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	43.01	32.8
PGSC0003DMT400024153	Potato	cytosol	42.8	32.64
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	35.07	31.58
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	34.45	31.02
GSMUA_Achr6P18710_001	Banana	cytosol	34.66	29.91
Os08t0105100-01	Rice	cytosol	32.99	28.37
TraesCS7D01G320300.1	Wheat	cytosol	32.15	27.95
TraesCS7A01G324600.1	Wheat	cytosol	32.15	27.95
TraesCS7B01G225100.1	Wheat	cytosol	32.15	27.95
AT5G39470.1	Thale cress	extracellular	9.81	27.65
Zm00001d049737_P001	Maize	cytosol	32.36	27.39
KXG24173	Sorghum	cytosol	31.32	26.69
KRH53935	Soybean	endoplasmic reticulum	45.72	19.23

Protein Annotations

EnsemblPlants:Bra028250.1	EnsemblPlants:Bra028250.1-P	EnsemblPlantsGene:Bra028250	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646	PFscan:PS50181
SUPFAM:SSF81383	UniParc:UPI0002544970	UniProt:M4EHI5	MapMan:35.1	:	:

Description

AT5G39460 (E=1e-094) | F-box family protein

Coordinates

chrA04:-:7104433..7105872

Molecular Weight (calculated)

54251.0 Da

IEP (calculated)

7.906

GRAVY (calculated)

-0.109

Length

479 amino acids

Sequence
(BLAST)

001: MTIRELRSEE SVGGTCLLLS LPEDVFAATS RFLSPSDICN LSLCCKSLCD LVDYSEKIWF VQCELVKALP LSEIVRWRRI GISSYKALCR FLVEVVSPLV
101: GVWVHQEPEL GNVVYVMPGF LSVVGCRIIP QKVGPLGIQE GRVMWSPVFE IICDHDDGST KFFLHGRGRE GSCVYPGSVT GIIDKTCNVL SLEVEPSQEK
201: KSGVPFQKLD DSDRRNLIEL VTSHVGVHVS EPLSGKLFPT RREDEGMLLE RRTMLLKMHK FGKNHAPTQV DINEMGASPC VNRRRFLSAG DTFGLSLKAS
301: YTEMSSYKGW PRMDLNRFCL HKLPIKSLGE DQEYAGLWGG TFGWPPGRCN EDKTGHAFYL LMLSYEESRK NNGKRLVGTK ILEGNDFVQH PNGTPMFVWK
401: RLTKTCLPSQ YESVPLPPWQ SWKMEHAAAD IQSSLPYLVL FLRYKLIVEC LVTSFAALHL HSQEKISQMF LRFHLLYIF

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.