CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	90.5	90.5
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	62.48	62.18
CDY30239	Canola	cytosol, extracellular, plastid	5.15	58.18
CDX74458	Canola	cytosol, extracellular, plastid	4.99	56.36
PGSC0003DMT400024153	Potato	cytosol	56.68	56.05
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	55.56	54.94
CDY30245	Canola	extracellular	9.34	54.21
CDY30240	Canola	cytosol, extracellular, vacuole	42.51	51.16
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	43.8	51.13
CDX74455	Canola	cytosol, plasma membrane	36.88	50.55
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	42.03	50.39
CDX74457	Canola	cytosol	42.03	50.39
Bra028246.1-P	Field mustard	vacuole	45.57	49.82
CDX99665	Canola	extracellular	12.88	49.38
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	45.89	49.22
Bra028249.1-P	Field mustard	cytosol, plasma membrane	38.81	49.18
GSMUA_Achr6P18710_001	Banana	cytosol	43.16	48.29
CDY30238	Canola	vacuole	28.5	47.84
AT5G39460.1	Thale cress	plasma membrane	43.16	46.94
CDY15950	Canola	extracellular	12.56	46.71
CDY71334	Canola	cytosol	5.64	46.67
TraesCS7B01G225100.1	Wheat	cytosol	41.22	46.46
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	42.35	46.3
TraesCS7D01G320300.1	Wheat	cytosol	40.74	45.92
TraesCS7A01G324600.1	Wheat	cytosol	40.58	45.73
CDY30242	Canola	cytosol	38.16	45.58
CDX74459	Canola	extracellular, vacuole	25.44	45.4
Os08t0105100-01	Rice	cytosol	40.1	44.7
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	40.74	44.7
KXG24173	Sorghum	cytosol	40.42	44.66
Zm00001d049737_P001	Maize	cytosol	39.94	43.82
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	33.66	43.63
CDY30244	Canola	cytosol, plasma membrane, plastid	34.3	42.26
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	36.07	42.11
CDX74454	Canola	cytosol	30.11	41.74
KRH53935	Soybean	endoplasmic reticulum	67.15	36.61
AT5G39470.1	Thale cress	extracellular	6.92	25.29

Protein Annotations

EMBL:ACUP02003334	EnsemblPlants:KRH59601	EnsemblPlantsGene:GLYMA_05G194000	EntrezGene:100781734	Gene3D:1.20.1280.50	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370
ProteinID:KRH59601	ProteinID:KRH59601.1	ProteinID:KRH59602.1	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000233A6D0
UniProt:K7KR77	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:37872646..37876103

Molecular Weight (calculated)

69447.3 Da

IEP (calculated)

6.205

GRAVY (calculated)

-0.178

Length

621 amino acids

Sequence
(BLAST)

001: MLSPEPCDLS FLLCLPDDVF GLVSRFLLPR DVCNLSLCCK SLYALGSSEK VWFTQCDMVG VVPQKDLVEW REGVSSYKSL CRFLLSVKPL LGIWVNQNPE
101: LGNLVYVMPG FVSVVGCRII PQELGPLGIQ DGPIQWSSVF EVIGDFDGSA TFFLHGREEG MDYVYRGSVK YIDESCNVLL LEVQPREQDN GSNLLQSRSL
201: DDSGGTISGK VCRSNSELSR FQKMGGNDEA MAPFSKLSFS DRRKLLEVTI GLLRQEVSSV AAGPLFPRLR DDCDNFQKDL VLLKERRAIF CEMNNLGSGQ
301: IDNEEVSQGA VGPMQLELDD IRKSCYWWKD ISDLLNKEDG HIQCTKKKCL GGYLWGSFKQ IVGRSSSINE SHTIFRKLTA RREIKHARLE DFLRSSDAIG
401: LSLKASTVKL SSYRAWPNMP DTWFALYKMP LRVPSADQIY VGLWGGTFGW PPGIPSEDKP GKALFFLLLS YEESQEQKLL IATKILEGTH YVLHPNGSAM
501: FIVDVNQPSS DPFPWDTNKD SFSVDITHSF TGEGISNGYG FRYPGSKPGT LFVFQNGILA FVWKDTRAVL TLQRLDLQDI LKKGERVPSL PPINNFSYLT
601: KSYSNVFTGF PGASTCLPSP R

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.