Factsheet for GSMUA_Achr4P16390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18710_001	Banana	cytosol	63.53	60.9
CDY30239	Canola	cytosol, extracellular, plastid	6.2	60.0
CDX74458	Canola	cytosol, extracellular, plastid	6.02	58.18
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	55.45	55.45
TraesCS7B01G225100.1	Wheat	cytosol	49.81	48.09
TraesCS7D01G320300.1	Wheat	cytosol	49.62	47.91
TraesCS7A01G324600.1	Wheat	cytosol	49.44	47.73
Os08t0105100-01	Rice	cytosol	49.81	47.58
KXG24173	Sorghum	cytosol	49.81	47.15
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	54.89	46.79
Zm00001d049737_P001	Maize	cytosol	48.87	45.94
CDY30245	Canola	extracellular	9.21	45.79
CDX99665	Canola	extracellular	13.91	45.68
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	51.5	44.12
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	51.13	43.8
PGSC0003DMT400024153	Potato	cytosol	50.75	42.99
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	50.56	42.83
CDY15950	Canola	extracellular	13.16	41.92
Bra028246.1-P	Field mustard	vacuole	44.74	41.9
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	40.04	41.12
CDY30240	Canola	cytosol, extracellular, vacuole	39.85	41.09
CDX74457	Canola	cytosol	39.85	40.93
CDY71334	Canola	cytosol	5.64	40.0
CDX74455	Canola	cytosol, plasma membrane	34.02	39.96
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	43.42	39.9
Bra028249.1-P	Field mustard	cytosol, plasma membrane	35.53	38.57
AT5G39460.1	Thale cress	plasma membrane	41.35	38.53
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	39.85	37.32
CDY30238	Canola	vacuole	25.38	36.49
CDY30242	Canola	cytosol	35.15	35.96
CDX74459	Canola	extracellular, vacuole	23.12	35.34
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	37.59	35.34
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	31.58	35.07
CDY30244	Canola	cytosol, plasma membrane, plastid	31.77	33.53
CDX74454	Canola	cytosol	28.2	33.48
KRH53935	Soybean	endoplasmic reticulum	52.63	24.58
AT5G39470.1	Thale cress	extracellular	6.77	21.18

Protein Annotations

EnsemblPlants:GSMUA_Achr4P16390_001	EnsemblPlants:GSMUA_Achr4T16390_001	EnsemblPlantsGene:GSMUA_Achr4G16390_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646
PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000294C09F	UniProt:M0SPF3
MapMan:35.1	:	:	:	:	:

Description

Putative F-box protein At5g39450 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16390_001]

Coordinates

chr4:-:14670271..14673659

Molecular Weight (calculated)

57778.4 Da

IEP (calculated)

6.781

GRAVY (calculated)

0.011

Length

532 amino acids

Sequence
(BLAST)

001: MPDGVATQVD CGSRLFLALP DDVLALVSAY LRPLDLCALA LCCRGLRAAV ASSEKAWLAQ CRRLGPPAHA LPLWREGVRS YRALCRFLAA VAPLLGVWVH
101: QNPELGNVVS VLWGFLSVVG VRIIPQELGP LGLDAGPLLW APVFEILADA DGAPSCFFLH GRGDHGEDCL YPGSVQSIDP SCNILLLEVD VHPTLGRKLR
201: WSDSSNTISS PSAAPPSPPS IPFSRLPFSD RRRLLDQVAG RVRLEIPLDL ATAPLFDRSP PCDDAKLLAR RWSELVNMHK QISGGRIDRK AAELAPGLIE
301: HAATTNGDVI SHHQITVSGK RKALVSVAAA QKKHAQLHQF LMSGDAVPSA CHEHAGLWAG TFGWPPGQPS EDKPGKALFF LLLSYEEVEG RPLLIATKIL
401: EGTHYVLHPN GSAMFIANLD ETSSDAFPWE TDSEPLQVEV EQSYSGEGIA SGYGFRYPGS KPGSLFVLQN GLLAFVWKES RSVLTLQRID LQELLKRGER
501: VPMLPPVANF SYLTKSYSNV FAGILSNSNC SY

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [extracellular,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.