Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG24173 | Sorghum | cytosol | 89.4 | 90.04 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 71.02 | 72.96 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 70.85 | 72.78 |
| Os08t0105100-01 | Rice | cytosol | 71.55 | 72.71 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 70.49 | 72.41 |
| CDY30239 | Canola | cytosol, extracellular, plastid | 5.83 | 60.0 |
| CDX74458 | Canola | cytosol, extracellular, plastid | 5.65 | 58.18 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 48.59 | 49.55 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 45.94 | 48.87 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 45.94 | 41.67 |
| CDY71334 | Canola | cytosol | 5.48 | 41.33 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 36.93 | 40.5 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 43.99 | 40.1 |
| Bra028246.1-P | Field mustard | vacuole | 40.11 | 39.96 |
| Bra028247.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 36.57 | 39.96 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 43.82 | 39.94 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 37.46 | 39.85 |
| CDX74457 | Canola | cytosol | 36.4 | 39.77 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 43.46 | 39.17 |
| PGSC0003DMT400024153 | Potato | cytosol | 43.46 | 39.17 |
| AT5G39450.1 | Thale cress | extracellular, plasma membrane, plastid | 39.75 | 38.86 |
| CDX74455 | Canola | cytosol, plasma membrane | 30.74 | 38.41 |
| CDY30245 | Canola | extracellular | 7.07 | 37.38 |
| Bra028249.1-P | Field mustard | cytosol, plasma membrane | 32.33 | 37.35 |
| AT5G39460.1 | Thale cress | plasma membrane | 36.57 | 36.25 |
| AT5G39480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 36.22 | 36.09 |
| CDY30242 | Canola | cytosol | 32.69 | 35.58 |
| CDX74459 | Canola | extracellular, vacuole | 21.55 | 35.06 |
| AT5G39490.1 | Thale cress | extracellular, plasma membrane, vacuole | 34.81 | 34.81 |
| CDY30238 | Canola | vacuole | 22.44 | 34.32 |
| Bra028250.1-P | Field mustard | cytosol, plastid, vacuole | 27.39 | 32.36 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 28.8 | 32.34 |
| CDX74454 | Canola | cytosol | 25.44 | 32.14 |
| CDX99665 | Canola | extracellular | 9.19 | 32.1 |
| CDY15950 | Canola | extracellular | 9.36 | 31.74 |
| KRH53935 | Soybean | endoplasmic reticulum | 43.99 | 21.86 |
| AT5G39470.1 | Thale cress | extracellular | 5.65 | 18.82 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | UniProt:A0A1D6PXN0 | ProteinID:AQK51250.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | PFAM:PF00646 | PFscan:PS50181 |
| PANTHER:PTHR31370 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI000844FA8B | EnsemblPlantsGene:Zm00001d049737 | EnsemblPlants:Zm00001d049737_P001 |
| EnsemblPlants:Zm00001d049737_T001 | SEG:seg | : | : | : | : |
Description
F-box protein
Coordinates
chr4:-:42137372..42139282
Molecular Weight (calculated)
62088.9 Da
IEP (calculated)
9.974
GRAVY (calculated)
-0.063
Length
566 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAVARDGAD LILSLPEDVL ALISAHLRPR DLLALSAASR RLRRALSADK AWLAQCRRLL PSQPHLLAWR AAAAGSSLAV CRFLHSAAPL LGLWAHQNPE
101: LGNLVAAVPG FLSVVAARAI PQELSPRLRW APVFELLADA HGRPALLFLH GHHHAHLFPG LLASLQPHAN VIFLEAHIAR DPFASSSSSS PHRFARLSFG
201: DRRRLLDSLV AACRVTLPPD LVDAPLFACS EDDLPLLAAR REAMLRLHRE SAGGMVRTPE VQGLLLEARK KATTTTTTDG GHRIPLRRSL SAVAGYFRNG
301: LRQMVTRSVS ANSRADNVDA KHLSLSDFLH DGESVGLSLR GARMRLSTYR AWPSMHDNRF ALYKLRVQAP MPGREYAGLW GGTFGWPPGR PDDGCKPKKA
401: LFFLLLSYEE DSEGKLQLIA TKVLEGTHYV VHPNGSSMFI TRMSEPSTEP FPWQTDGEFD VERSFAGEGI ANGYGFRYPS SKPGSLFVLQ NGLLAFVWRE
501: TGAVLTLQRL DLDELLKKGE RVPALQPVPN FAYLTKSYSN VFTSFPVGAA SPRIILTFEN SAGQIC
101: LGNLVAAVPG FLSVVAARAI PQELSPRLRW APVFELLADA HGRPALLFLH GHHHAHLFPG LLASLQPHAN VIFLEAHIAR DPFASSSSSS PHRFARLSFG
201: DRRRLLDSLV AACRVTLPPD LVDAPLFACS EDDLPLLAAR REAMLRLHRE SAGGMVRTPE VQGLLLEARK KATTTTTTDG GHRIPLRRSL SAVAGYFRNG
301: LRQMVTRSVS ANSRADNVDA KHLSLSDFLH DGESVGLSLR GARMRLSTYR AWPSMHDNRF ALYKLRVQAP MPGREYAGLW GGTFGWPPGR PDDGCKPKKA
401: LFFLLLSYEE DSEGKLQLIA TKVLEGTHYV VHPNGSSMFI TRMSEPSTEP FPWQTDGEFD VERSFAGEGI ANGYGFRYPS SKPGSLFVLQ NGLLAFVWRE
501: TGAVLTLQRL DLDELLKKGE RVPALQPVPN FAYLTKSYSN VFTSFPVGAA SPRIILTFEN SAGQIC
001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
Arabidopsis Description
F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [extracellular,plasma membrane,plastid]
SUBAcon: [extracellular,plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.