Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028247.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 99.03 | 99.03 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 95.37 | 95.74 |
| CDY71334 | Canola | cytosol | 11.58 | 80.0 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 72.2 | 74.21 |
| CDX74454 | Canola | cytosol | 63.32 | 73.21 |
| CDX74455 | Canola | cytosol, plasma membrane | 58.69 | 67.11 |
| CDY30242 | Canola | cytosol | 62.36 | 62.12 |
| CDY30245 | Canola | extracellular | 12.36 | 59.81 |
| CDY30238 | Canola | vacuole | 41.7 | 58.38 |
| AT5G39480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 63.51 | 57.92 |
| AT5G39460.1 | Thale cress | plasma membrane | 63.32 | 57.44 |
| AT5G39490.1 | Thale cress | extracellular, plasma membrane, vacuole | 62.55 | 57.24 |
| CDX74459 | Canola | extracellular, vacuole | 36.1 | 53.74 |
| CDY30239 | Canola | cytosol, extracellular, plastid | 5.41 | 50.91 |
| CDY15950 | Canola | extracellular | 16.22 | 50.3 |
| CDX99665 | Canola | extracellular | 15.64 | 50.0 |
| CDX74458 | Canola | cytosol, extracellular, plastid | 5.21 | 49.09 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 52.51 | 43.59 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 50.58 | 42.19 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 50.39 | 42.03 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 49.42 | 40.76 |
| PGSC0003DMT400024153 | Potato | cytosol | 49.23 | 40.61 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 40.93 | 39.85 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 39.96 | 37.3 |
| Os08t0105100-01 | Rice | cytosol | 39.38 | 36.62 |
| Zm00001d049737_P001 | Maize | cytosol | 39.77 | 36.4 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 38.61 | 36.3 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 38.61 | 36.3 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 38.42 | 36.12 |
| KXG24173 | Sorghum | cytosol | 39.0 | 35.94 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 35.71 | 34.77 |
| AT5G39470.1 | Thale cress | extracellular | 10.42 | 31.76 |
| KRH53935 | Soybean | endoplasmic reticulum | 50.39 | 22.91 |
Protein Annotations
| EnsemblPlants:CDX74457 | EnsemblPlantsGene:GSBRNA2T00114331001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31370 | PFscan:PS50181 | ProteinID:CDX74457 |
| ProteinID:CDX74457.1 | SUPFAM:SSF81383 | UniParc:UPI0004EDC4DA | MapMan:35.1 | : | : |
Description
BnaA04g09320D
Coordinates
chrLK031801:+:429444..431000
Molecular Weight (calculated)
58371.9 Da
IEP (calculated)
5.384
GRAVY (calculated)
-0.240
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTIRELRSE ESVGSTCLLL SLPEDVFAVT SRFLSPSDIC NLSLCCKSLC DLVDYSEKIW RVQCEVVKVL SLSEIVQWRT GISSYKALCR FLVDVIKPLV
101: GVWVHQNPEL GNVVYVMSGF LSVIGCRIIP QEVGSLGIQE GRLMWSPVFE IVSDFDGSTK FFLHGRGREG SCVYPGSVTG IIDKTCNVLS LEVEPSQEKK
201: SGVPFQKLDD SDRRNLIESV TSHVGLLHES EPLNVKLFPT RREDEEGMLL ERRTMLLKMH KFGKNWKHMN LEEDGLCYNP TQVDINEMGA SPCVNLSSFL
301: SAGDTFGLSL KASYTEMSSY KGWPRMDLDR FCLHKLPIKS PGDDQEYAGL WGGTFGWPPG RCNEDETRHA FYLLMLSYEE SRKSNGKRLV GTKILEGTDY
401: VEHPNGTAMF VVDIDDTPSL EPFPFDADGR DFEHSYKGKG ISNGYGFRYP GSKPGSLYVI SDDHLAFVWH GTKDVFTLKR LDLDQIMKKG FGLWVPPLPP
501: VENFTYMETS YTNVFTKS
101: GVWVHQNPEL GNVVYVMSGF LSVIGCRIIP QEVGSLGIQE GRLMWSPVFE IVSDFDGSTK FFLHGRGREG SCVYPGSVTG IIDKTCNVLS LEVEPSQEKK
201: SGVPFQKLDD SDRRNLIESV TSHVGLLHES EPLNVKLFPT RREDEEGMLL ERRTMLLKMH KFGKNWKHMN LEEDGLCYNP TQVDINEMGA SPCVNLSSFL
301: SAGDTFGLSL KASYTEMSSY KGWPRMDLDR FCLHKLPIKS PGDDQEYAGL WGGTFGWPPG RCNEDETRHA FYLLMLSYEE SRKSNGKRLV GTKILEGTDY
401: VEHPNGTAMF VVDIDDTPSL EPFPFDADGR DFEHSYKGKG ISNGYGFRYP GSKPGSLYVI SDDHLAFVWH GTKDVFTLKR LDLDQIMKKG FGLWVPPLPP
501: VENFTYMETS YTNVFTKS
001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLPALVDTEK MWLVQCEEVK VLPLLEIVQW RIGISSYKAL CRFLVEVVKP LLGIWVQQNP
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE
Arabidopsis Description
Putative F-box protein At5g39480 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY8]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.