CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74454	Canola	cytosol	82.34	92.63
CDY30240	Canola	cytosol, extracellular, vacuole	75.99	74.22
CDX74457	Canola	cytosol	74.21	72.2
CDY30245	Canola	extracellular	12.7	59.81
CDY71334	Canola	cytosol	8.73	58.67
CDY30238	Canola	vacuole	41.47	56.49
CDX74455	Canola	cytosol, plasma membrane	46.43	51.66
CDX74459	Canola	extracellular, vacuole	35.52	51.44
CDY15950	Canola	extracellular	16.67	50.3
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	55.36	49.12
AT5G39460.1	Thale cress	plasma membrane	54.96	48.51
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	54.17	48.23
CDX99665	Canola	extracellular	15.48	48.15
CDY30242	Canola	cytosol	49.6	48.08
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	45.24	36.54
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	42.86	34.78
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	42.26	34.3
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	41.07	32.96
PGSC0003DMT400024153	Potato	cytosol	40.87	32.8
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	33.53	31.77
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	32.94	31.2
GSMUA_Achr6P18710_001	Banana	cytosol	33.13	30.09
Os08t0105100-01	Rice	cytosol	32.54	29.44
TraesCS7D01G320300.1	Wheat	cytosol	31.94	29.22
TraesCS7B01G225100.1	Wheat	cytosol	31.94	29.22
TraesCS7A01G324600.1	Wheat	cytosol	31.94	29.22
AT5G39470.1	Thale cress	extracellular	9.72	28.82
Zm00001d049737_P001	Maize	cytosol	32.34	28.8
KXG24173	Sorghum	cytosol	31.55	28.29
KRH53935	Soybean	endoplasmic reticulum	43.45	19.23
CDX74458	Canola	cytosol, extracellular, plastid	1.59	14.55
CDY30239	Canola	cytosol, extracellular, plastid	1.39	12.73

Protein Annotations

EnsemblPlants:CDY30244	EnsemblPlantsGene:GSBRNA2T00044875001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646	PFscan:PS50181
ProteinID:CDY30244	ProteinID:CDY30244.1	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EE6456	UniProt:A0A078GYL3
MapMan:35.1	:	:	:	:	:

Description

BnaC04g31550DBnaC04g31550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYL3]

Coordinates

chrLK032251:-:25053..26832

Molecular Weight (calculated)

57480.9 Da

IEP (calculated)

7.726

GRAVY (calculated)

-0.125

Length

504 amino acids

Sequence
(BLAST)

001: MTIRELRSEE SVGGTCLLLS LPEDVFAATS RFLSPSDICN LSLCCKSLCD LVDSEKIWFV QCELVKALPL SEIVRWRIGI SSYKALCRFL VEVVKPLVGV
101: WVHQEPELGN VVYVMPGFLS VVGCRIIPQK VGPFGIQEGR LMWSPVFEII CDHDDGSTKF FLHGRGREGS CVYPGLVTGI DKTCNVLSLE VEPRREKKLC
201: SGVPFQKLDD SDRRNLLELV TSHVGVHVSE PLSGKLFPTR REDEGMLLER RTMLLKIHKF GKNWKHINLE EDGLCYNPTQ VDINEMGASP CVNRRRFLSA
301: GDIFGLSLKA SYTEMSSYKG WPRMDLNRFC LHKLPIKSLG DDQEYAGLWG GTFGWPPGRC NEDETGNAFY LLMLSYEESR KNNGKRLVGT KILEGNDFVQ
401: HPNGTPMFVV RTLLIWKRLT QTCLPSHYES VPLPPWQSWK MEHSAADIQS SLPYLVLFLR YKLIVECLVT SFASLHLHSQ EKISQMFLRF HLLFTYFKQY
501: FNNT

Best Arabidopsis Sequence Match ( AT5G39480.1 )
(BLAST)

001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLPALVDTEK MWLVQCEEVK VLPLLEIVQW RIGISSYKAL CRFLVEVVKP LLGIWVQQNP
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE

Arabidopsis Description

Putative F-box protein At5g39480 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY8]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.