Factsheet for VIT_07s0031g02420.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
plastid 2
extracellular 3
mitochondrion 1
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	65.87	65.45
PGSC0003DMT400024153	Potato	cytosol	65.71	65.29
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	62.98	63.28
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	62.18	62.48
CDY30239	Canola	cytosol, extracellular, plastid	5.45	61.82
CDX74458	Canola	cytosol, extracellular, plastid	5.29	60.0
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	46.79	54.89
Bra028246.1-P	Field mustard	vacuole	48.56	53.35
CDY30245	Canola	extracellular	9.13	53.27
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	49.36	53.2
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	43.91	52.9
CDY30240	Canola	cytosol, extracellular, vacuole	43.43	52.52
CDX74457	Canola	cytosol	43.59	52.51
CDX99665	Canola	extracellular	13.62	52.47
GSMUA_Achr6P18710_001	Banana	cytosol	46.47	52.25
CDY30238	Canola	vacuole	30.29	51.08
CDY15950	Canola	extracellular	13.46	50.3
CDX74455	Canola	cytosol, plasma membrane	36.38	50.11
CDX74459	Canola	extracellular, vacuole	27.4	49.14
Bra028249.1-P	Field mustard	cytosol, plasma membrane	38.46	48.98
AT5G39460.1	Thale cress	plasma membrane	44.71	48.86
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	43.75	48.06
TraesCS7A01G324600.1	Wheat	cytosol	42.15	47.73
TraesCS7B01G225100.1	Wheat	cytosol	42.15	47.73
TraesCS7D01G320300.1	Wheat	cytosol	42.15	47.73
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	43.27	47.7
KXG24173	Sorghum	cytosol	42.79	47.51
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	35.74	46.56
Os08t0105100-01	Rice	cytosol	41.51	46.5
Zm00001d049737_P001	Maize	cytosol	41.67	45.94
CDX74454	Canola	cytosol	32.53	45.31
CDY30244	Canola	cytosol, plasma membrane, plastid	36.54	45.24
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	38.46	45.11
CDY30242	Canola	cytosol	37.34	44.81
CDY71334	Canola	cytosol	4.81	40.0
KRH53935	Soybean	endoplasmic reticulum	64.58	35.38
AT5G39470.1	Thale cress	extracellular	7.05	25.88

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100262918	wikigene:100262918	MapMan:35.1	EMBL:AM484471	ProteinID:CAN77670
ProteinID:CAN77670.1	ProteinID:CCB47152	ProteinID:CCB47152.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H4E1
EMBL:FN595233	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100262918
wikigene:LOC100262918	PFscan:PS50181	PANTHER:PTHR31370	SMART:SM00256	SUPFAM:SSF81383	TIGR:TC56863
UniParc:UPI0002109A91	ArrayExpress:VIT_07s0031g02420	EnsemblPlantsGene:VIT_07s0031g02420	EnsemblPlants:VIT_07s0031g02420.t01	RefSeq:XP_002275503	RefSeq:XP_002275503.1
RefSeq:XP_010652920.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:18562829..18572265

Molecular Weight (calculated)

69025.9 Da

IEP (calculated)

8.571

GRAVY (calculated)

-0.242

Length

624 amino acids

Sequence
(BLAST)

001: MGSDPCGSSL LLALPDDLFA MVSRSLSPRD LCNLSLGCRS LSTLVASEKV WLTQCEMVGV VSYGDLIEWR KGISSYKALC RFLISVKPLL GIWVHQNPEL
101: GNVVYVMPGF VSVVGCRIIP QELGPLGIEE GPILWAPVFE IIGDFDGSTA FFLHGREREN DHFYPGSVKG IEKNCNVLLL EVEPREQTSG GKLVHARSFI
201: DHSDKEQRKV CRSDSGLSRS QRLVEQSGPM VPFSRLAFGD RRRLLEIVTN QVRLTEPSSA KGPLFPHSRN DEENFRKDMM LLFERRSILM QKYKLGGGNI
301: DLKAAPELPS DPTLLEVSEI RKSLDHSSAF RGSVSGDDGC TQVAKRKTIG GYFRDGFKQI LGKSGSMNGS RPSSKNGSSS SENKHVQLHD FLKSGDTIGL
401: TLHASNVKLS SYRAWPNMHD SRFALYKLPM RVSTAGQEYA GLWGGTFGWP PGRPSEDKPG KALFFLLLSY EEIDEQRHLI ATKILEGTHY VLHPNGSAMF
501: IVKINEPSID PFPWETDADS LPVAVKHAFV GDGIANGYGF RYPGSKPGSL YVIQGGLLAF MWKESRAILT LQRLNLQELL KKGERVPALP PIANFSYLTK
601: SYSNVFAGCA NTTNCLASPR QNYL

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.