Factsheet for GSMUA_Achr6P18710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	60.9	63.53
CDY30239	Canola	cytosol, extracellular, plastid	6.13	61.82
CDX74458	Canola	cytosol, extracellular, plastid	5.95	60.0
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	49.19	51.32
Os08t0105100-01	Rice	cytosol	50.09	49.91
KXG24173	Sorghum	cytosol	49.91	49.29
TraesCS7B01G225100.1	Wheat	cytosol	48.47	48.82
Zm00001d049737_P001	Maize	cytosol	49.55	48.59
TraesCS7A01G324600.1	Wheat	cytosol	47.93	48.28
TraesCS7D01G320300.1	Wheat	cytosol	47.93	48.28
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	52.25	46.47
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	49.19	43.96
CDY30245	Canola	extracellular	8.47	43.93
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	48.29	43.16
Bra028246.1-P	Field mustard	vacuole	44.14	43.13
PGSC0003DMT400024153	Potato	cytosol	48.47	42.83
CDX99665	Canola	extracellular	12.43	42.59
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	47.93	42.36
CDX74455	Canola	cytosol, plasma membrane	34.23	41.94
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	43.6	41.8
CDY15950	Canola	extracellular	12.25	40.72
CDY30240	Canola	cytosol, extracellular, vacuole	37.84	40.7
Bra028249.1-P	Field mustard	cytosol, plasma membrane	35.86	40.61
AT5G39460.1	Thale cress	plasma membrane	41.26	40.11
CDX74457	Canola	cytosol	37.3	39.96
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	37.3	39.96
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	40.18	39.26
CDY71334	Canola	cytosol	5.23	38.67
CDY30238	Canola	vacuole	25.23	37.84
CDY30242	Canola	cytosol	35.32	37.69
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	38.2	37.46
CDX74459	Canola	extracellular, vacuole	23.42	37.36
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	29.91	34.66
CDY30244	Canola	cytosol, plasma membrane, plastid	30.09	33.13
CDX74454	Canola	cytosol	26.67	33.04
KRH53935	Soybean	endoplasmic reticulum	50.27	24.5
AT5G39470.1	Thale cress	extracellular	6.13	20.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P18710_001	EnsemblPlants:GSMUA_Achr6T18710_001	EnsemblPlantsGene:GSMUA_Achr6G18710_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646
SEG:seg	SUPFAM:SSF81383	UniParc:UPI000295E90E	UniProt:M0T869	MapMan:35.1	:

Description

Putative F-box protein At5g39450 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18710_001]

Coordinates

chr6:+:12923675..12928384

Molecular Weight (calculated)

60787.5 Da

IEP (calculated)

7.690

GRAVY (calculated)

0.027

Length

555 amino acids

Sequence
(BLAST)

001: MSGGVAVEAE DCGSGFFLGL PDDVLALISA GLRHGDLCAL ALCCRGLHAA IAASERVWLA QCRRLGPPPH LLSRWRMGVR SYRALCRFLA AVAPLLGIWV
101: HQNPELGNVV CVIWGFLSIV GVRVIPQELG PLGLDAGPLL WAPVFEILAD ANGAPSRFFL HGRDCGFDCL YPGFVRSIES SCNVLFLEAD ARHIVSTFPS
201: KQHLDGRRLL ELVAARVRLK VPRDLASAPL FERSSFCDDA SLLADRRLEL LEMLKLNGGW INRDVAELAL GLMEHQSAEN INAIDDRPCP AAHQGRAFSS
301: ITGYLKQFMG RSSIPSASCS ISRNGSSSGS SKNKHAQLQE FLRIALYKLP LQGPMAGREY AGLWGGTFGW PPGQPSEGKS EKALFFLLLS YEEVEGHLLL
401: IGTKILEGTH YVLHPNGSAM FIAKMDEIGS EPFPWETSAE SLQVEVKNSY SGEGIVSGYG FQYPGSKPGS LFVLQNGLLA FVWKESKSVL TLQRVDLQEL
501: LKKGERVPVL PPIANFAYLT KSYSNVFAGF PTNSEARNRR NKHILHTILY SLEDK

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.