CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	90.5	90.5
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	63.28	62.98
CDY30239	Canola	cytosol, extracellular, plastid	5.15	58.18
PGSC0003DMT400024153	Potato	cytosol	57.49	56.85
CDX74458	Canola	cytosol, extracellular, plastid	4.99	56.36
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	56.52	55.89
CDY30245	Canola	extracellular	9.18	53.27
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	44.12	51.5
CDY30240	Canola	cytosol, extracellular, vacuole	42.67	51.36
AT5G39450.1	Thale cress	extracellular, plasma membrane, plastid	47.18	50.6
CDX74457	Canola	cytosol	42.19	50.58
Bra028247.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	42.19	50.58
Bra028246.1-P	Field mustard	vacuole	46.22	50.53
CDX74455	Canola	cytosol, plasma membrane	36.39	49.89
GSMUA_Achr6P18710_001	Banana	cytosol	43.96	49.19
CDY30238	Canola	vacuole	29.31	49.19
CDX99665	Canola	extracellular	12.72	48.77
Bra028249.1-P	Field mustard	cytosol, plasma membrane	38.0	48.16
AT5G39460.1	Thale cress	plasma membrane	43.8	47.64
CDY15950	Canola	extracellular	12.56	46.71
TraesCS7B01G225100.1	Wheat	cytosol	41.38	46.64
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	42.51	46.48
TraesCS7D01G320300.1	Wheat	cytosol	40.9	46.1
TraesCS7A01G324600.1	Wheat	cytosol	40.74	45.92
CDX74459	Canola	extracellular, vacuole	25.44	45.4
KXG24173	Sorghum	cytosol	40.9	45.2
Os08t0105100-01	Rice	cytosol	40.42	45.06
CDY30242	Canola	cytosol	37.52	44.81
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	40.74	44.7
Bra028250.1-P	Field mustard	cytosol, plastid, vacuole	34.14	44.26
Zm00001d049737_P001	Maize	cytosol	40.1	43.99
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	37.04	43.23
CDY30244	Canola	cytosol, plasma membrane, plastid	34.78	42.86
CDY71334	Canola	cytosol	5.15	42.67
CDX74454	Canola	cytosol	30.6	42.41
KRH53935	Soybean	endoplasmic reticulum	67.63	36.87
AT5G39470.1	Thale cress	extracellular	7.09	25.88

Protein Annotations

EMBL:ACUP02004742	EnsemblPlants:KRH40957	EnsemblPlantsGene:GLYMA_08G002000	EntrezGene:100779818	Gene3D:1.20.1280.50	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370
PFAM:PF00646	PFscan:PS50181	ProteinID:KRH40957	ProteinID:KRH40957.1	ProteinID:KRH40958.1	SEG:seg
SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002337FA2	UniProt:I1KNW6	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr8:+:134141..137840

Molecular Weight (calculated)

69731.3 Da

IEP (calculated)

5.593

GRAVY (calculated)

-0.234

Length

621 amino acids

Sequence
(BLAST)

001: MLSPEPCDPN FLLCLPDDVF GMVSRFLLPR DVCNLSLCCK SLYALSSSEK VWFPQCYMVG VVPQKDLVEW REGVSSYQAL CRFLLSVKPL LGIWVHQNPE
101: LGNLVYVMPG FVSVVGCRII PQELGPLGIQ DGPIQWSSVF EVIGDFDGSA TFFLHGREEG MDYVYRGSVK YIDESCNVLL LEVEPREQNY GINLLQSRSL
201: DDSGGTVSGE VCRSNRELSR LQKVGGNDEE MVPFSKLAFS DRRKLLEVTI SLVRQEVPSV AAGPLFPRLR DDCDNFQKDF VLLKERREVF CQMNNFGNGQ
301: IDNEEISQGT VGPVQLELDD IRKSCNWSKD ISDLLSKEDG HTQFTKKKSL GGYLWGSFKQ IVGRSSSINE SHAIFKKLTT RREIKHARLE DFLRSSDAIE
401: LSLKASTVKL SSYRAWPNMP DTWFALYKMP LQVPSADQIY AGLWGGTFGW PPGKPSEDKP GKALFFLLLS YEESQEQQLL IATKILEGTH YGLHPNGSAM
501: FIVDVNEPSS DPFPWDINKD SLSVDIKHVF TGEGISNGYG FRYPGSKPGS LFVFQNGVLA FVWKDTRAVL TLQRLDLQDL LKKGERIPSL PPINNFSYLT
601: KSYSNVFTGF PGASTWSPSP R

Best Arabidopsis Sequence Match ( AT5G39450.1 )
(BLAST)

001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS

Arabidopsis Description

F-box protein At5g39450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD6]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.