Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30238 | Canola | vacuole | 77.87 | 73.24 |
| CDY30245 | Canola | extracellular | 17.82 | 57.94 |
| Bra028246.1-P | Field mustard | vacuole | 83.62 | 51.23 |
| CDX99665 | Canola | extracellular | 20.11 | 43.21 |
| CDY15950 | Canola | extracellular | 20.4 | 42.52 |
| CDY30240 | Canola | cytosol, extracellular, vacuole | 53.74 | 36.24 |
| CDX74457 | Canola | cytosol | 53.74 | 36.1 |
| CDY30244 | Canola | cytosol, plasma membrane, plastid | 51.44 | 35.52 |
| AT5G39450.1 | Thale cress | extracellular, plasma membrane, plastid | 58.62 | 35.23 |
| CDX74454 | Canola | cytosol | 45.11 | 35.04 |
| CDX74455 | Canola | cytosol, plasma membrane | 39.94 | 30.68 |
| CDY30242 | Canola | cytosol | 41.67 | 27.88 |
| VIT_07s0031g02420.t01 | Wine grape | endoplasmic reticulum, extracellular | 49.14 | 27.4 |
| Solyc04g076520.1.1 | Tomato | cytosol, nucleus, plasma membrane | 47.13 | 26.11 |
| PGSC0003DMT400024153 | Potato | cytosol | 46.55 | 25.8 |
| KRH59601 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 45.4 | 25.44 |
| KRH40957 | Soybean | cytosol, endoplasmic reticulum, vacuole | 45.4 | 25.44 |
| GSMUA_Achr6P18710_001 | Banana | cytosol | 37.36 | 23.42 |
| GSMUA_Achr4P16390_001 | Banana | cytosol, nucleus, plasma membrane | 35.34 | 23.12 |
| GSMUA_Achr8P32580_001 | Banana | endoplasmic reticulum | 34.77 | 22.74 |
| Os08t0105100-01 | Rice | cytosol | 35.63 | 22.26 |
| TraesCS7A01G324600.1 | Wheat | cytosol | 34.48 | 21.78 |
| TraesCS7B01G225100.1 | Wheat | cytosol | 34.48 | 21.78 |
| KXG24173 | Sorghum | cytosol | 35.06 | 21.71 |
| TraesCS7D01G320300.1 | Wheat | cytosol | 34.2 | 21.6 |
| Zm00001d049737_P001 | Maize | cytosol | 35.06 | 21.55 |
| KRH53935 | Soybean | endoplasmic reticulum | 46.26 | 14.14 |
| CDY30239 | Canola | cytosol, extracellular, plastid | 0.57 | 3.64 |
| CDX74458 | Canola | cytosol, extracellular, plastid | 0.57 | 3.64 |
| CDY71334 | Canola | cytosol | 0.57 | 2.67 |
Protein Annotations
| EnsemblPlants:CDX74459 | EnsemblPlantsGene:GSBRNA2T00114333001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31370 | PFAM:PF00646 | PFscan:PS50181 |
| ProteinID:CDX74459 | ProteinID:CDX74459.1 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EEAF81 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA04g09300D
Coordinates
chrLK031801:-:431992..433382
Molecular Weight (calculated)
39241.4 Da
IEP (calculated)
5.882
GRAVY (calculated)
-0.021
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIGDLLSEL LLSLPEDVFA LISRFLSPTD VCNLSLCCKT LRDLVDSEKI WLVQCEVVKV VKPLVGVWVH QNPELGNVVY VMSGFLSVIG CRIIPQEVGS
101: LGIQEGRLLW SPVFEIVSGF DGSARFFLHG IDRESSYLYP GFVTSIDKCC NVLLLERRAE KVLFPFCKLP FCDRRKLLYL VTGHVGLPVP ELSLKDDKAT
201: SHMSLEDELC YDPIQVEIND ELWTHLGYGG DFRHVDDEVQ VQGTQRKSLS NSSSAKQQAS CSSEIRRFNL QKFLSAGDFV GLSVKASKIK LTSYRGWPSM
301: HETHFALYKL PIKIPVEENQ EYAGLWGGTF GWPPGKCTED KPDWFAYF
101: LGIQEGRLLW SPVFEIVSGF DGSARFFLHG IDRESSYLYP GFVTSIDKCC NVLLLERRAE KVLFPFCKLP FCDRRKLLYL VTGHVGLPVP ELSLKDDKAT
201: SHMSLEDELC YDPIQVEIND ELWTHLGYGG DFRHVDDEVQ VQGTQRKSLS NSSSAKQQAS CSSEIRRFNL QKFLSAGDFV GLSVKASKIK LTSYRGWPSM
301: HETHFALYKL PIKIPVEENQ EYAGLWGGTF GWPPGKCTED KPDWFAYF
001: MVLARLIFQA TIYPIWLDKT EASDISKLAT QFGTLRLIDE AISGKLASYT SYEHLQLEAL IAWFHHLQPK FENNLNENTS KSALSSEFCK VGACLLLTLP
101: EDVFSVISHF LSPSDICDII FCCKSLCALV DSEKTWLVQY EVVKVVKPLV GIWVQKNPVI GISYPLLDAG
101: EDVFSVISHF LSPSDICDII FCCKSLCALV DSEKTWLVQY EVVKVVKPLV GIWVQKNPVI GISYPLLDAG
Arabidopsis Description
Putative F-box protein At5g39470 [Source:UniProtKB/Swiss-Prot;Acc:Q3E8K6]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.