CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole, cytosol

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, vacuole
Any Predictor:	extracellular, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74457	Canola	cytosol	95.74	95.37
CDY71334	Canola	cytosol	12.21	84.0
CDY30244	Canola	cytosol, plasma membrane, plastid	74.22	75.99
CDX74454	Canola	cytosol	63.37	72.99
CDX74455	Canola	cytosol, plasma membrane	59.5	67.77
CDY30242	Canola	cytosol	62.6	62.12
CDY30238	Canola	vacuole	42.25	58.92
AT5G39460.1	Thale cress	plasma membrane	64.15	57.97
CDY30245	Canola	extracellular	12.02	57.94
AT5G39480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	63.76	57.92
AT5G39490.1	Thale cress	extracellular, plasma membrane, vacuole	62.79	57.24
CDX74459	Canola	extracellular, vacuole	36.24	53.74
CDY15950	Canola	extracellular	16.09	49.7
CDX99665	Canola	extracellular	15.5	49.38
CDY30239	Canola	cytosol, extracellular, plastid	5.23	49.09
CDX74458	Canola	cytosol, extracellular, plastid	5.04	47.27
VIT_07s0031g02420.t01	Wine grape	endoplasmic reticulum, extracellular	52.52	43.43
KRH40957	Soybean	cytosol, endoplasmic reticulum, vacuole	51.36	42.67
KRH59601	Soybean	endoplasmic reticulum, extracellular, plasma membrane	51.16	42.51
Solyc04g076520.1.1	Tomato	cytosol, nucleus, plasma membrane	49.81	40.92
PGSC0003DMT400024153	Potato	cytosol	49.61	40.76
GSMUA_Achr4P16390_001	Banana	cytosol, nucleus, plasma membrane	41.09	39.85
GSMUA_Achr6P18710_001	Banana	cytosol	40.7	37.84
TraesCS7D01G320300.1	Wheat	cytosol	39.53	37.02
TraesCS7A01G324600.1	Wheat	cytosol	39.53	37.02
Os08t0105100-01	Rice	cytosol	39.92	36.98
Zm00001d049737_P001	Maize	cytosol	40.5	36.93
TraesCS7B01G225100.1	Wheat	cytosol	39.34	36.84
KXG24173	Sorghum	cytosol	39.53	36.3
GSMUA_Achr8P32580_001	Banana	endoplasmic reticulum	36.24	35.15
AT5G39470.1	Thale cress	extracellular	10.66	32.35
KRH53935	Soybean	endoplasmic reticulum	50.97	23.09

Protein Annotations

EnsemblPlants:CDY30240	EnsemblPlantsGene:GSBRNA2T00044869001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31370	PFAM:PF00646	PFscan:PS50181	ProteinID:CDY30240
ProteinID:CDY30240.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EE9C2F	UniProt:A0A078GUQ7	MapMan:35.1

Description

BnaC04g31510DBnaC04g31510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUQ7]

Coordinates

chrLK032251:-:4956..6506

Molecular Weight (calculated)

57670.3 Da

IEP (calculated)

5.501

GRAVY (calculated)

-0.185

Length

516 amino acids

Sequence
(BLAST)

001: MMTIRELRLE ESVGGTCLLL SLPGDVFAVT SGFLSPSDIC NLSLCCKSLC DLVDHSEKIW RVQCEVVKVL PLSEIVQWRT GISSYKALCR FLVEVIKPLV
101: GVWVHQNPEL GNVVYVMSGF LSVIGCRIIP QEVGSLGIQE GRLMWSPVFE IVSDFDGSTK FFLHGRGREG SCVYPGLVTG IIDKTCNVLS LEVEPSQEKK
201: SGVPFQKLDD SDRRNLLELV TSHVGVHVSE PLSGKLFPTR REDEGMLLER RTMLLKIHKF GKNWKHMNLE EDGLCYNPTQ VDINEMGASP CVNLSSFLSA
301: GDTFGLSLKA SYTEMSSYKG WPRMDLDRFC LHKLPIKSPG DDQEYAGLWG GTFGWPPGRS NEDETGNAFY LLMLSYEESK KNNGKRLVGT KILEGTDYVE
401: HPNGTAMFVV DIDDTPSLEP FPFDADGRDF EHSYKGKGIS NGYGFRYPGS KPGSLYVISD DHLAFVWHGT KDVFTLKRLD LDQIMKKGLG LWVPPLPPVE
501: NFTYMETSYA NVFTKS

Best Arabidopsis Sequence Match ( AT5G39480.1 )
(BLAST)

001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLPALVDTEK MWLVQCEEVK VLPLLEIVQW RIGISSYKAL CRFLVEVVKP LLGIWVQQNP
101: ELGNVVYVMP GFLSVVGCRI IPQKVAPSWI QEDRVKWSPV FEIICGFDGS NGFFLHGRDK EGSCLYPGFV MGIEKSCNVL QLDVVPRQEK SSCNEIERGA
201: SREEGEIPFW MLAFSDRKNL LNIVTSHVSL HVVEPLNEML FPTLKYDEAM LVERRTILLK MHKFGGNWKN MNLEEDDQLC YNPMQVKINE MLENLGDDYF
301: FDEEELIEVT PTENTNVLGE SSSSKNTTPS QSEIRVSNRQ SFLSSGDTFG LGLTASYSEM SYYKGWPYMH FHHFLLYKLP VKKAVDQEAY AGLWGGTIGC
401: PAGKCPKGKT EKSLYLLMLT YEESEEHSER VLIGTKILEG KRYVRHPNGT AMFVVKIDTP SLDPFPVDAN ETHFENSYSG EGIAEGYSFR YTGSKPGSLF
501: VITNDLLAFV WKETKVVITL QRLNLTEILK KGLGSCVPPL PPSKNFTYMR RSFINEFTKL STDSSYSE

Arabidopsis Description

Putative F-box protein At5g39480 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY8]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.