CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, nucleus

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, peroxisome
Any Predictor:	extracellular, nucleus, peroxisome, plastid
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01389
CDY29370
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10400.1	CDY01389	AT1G20140.1	21798944
AT4G10400.1	CDY29370	AT1G20140.1	21798944
AT4G10400.1	CDY43408	AT1G20140.1	21798944
AT4G10400.1	CDY44209	AT1G20140.1	21798944
AT4G10400.1	CDY63159	AT1G20140.1	21798944
AT4G10400.1	CDY67544	AT1G20140.1	21798944
AT4G10400.1	CDY68971	AT1G20140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029225.1-P	Field mustard	cytosol	62.7	67.71
CDY35372	Canola	cytosol	11.9	37.76
CDY40226	Canola	cytosol	11.25	33.65
CDY52958	Canola	cytosol	21.54	33.0
CDY35566	Canola	cytosol	14.47	32.85
CDY17463	Canola	cytosol	30.23	31.54
CDY34607	Canola	cytosol	14.15	30.99
CDX84569	Canola	mitochondrion	25.4	29.92
AT4G09920.1	Thale cress	cytosol, plasma membrane, plastid	30.23	29.75
CDX84780	Canola	cytosol	17.36	29.67
AT4G10410.1	Thale cress	cytosol, plasma membrane, plastid	24.76	29.28
CDY41224	Canola	cytosol, plasma membrane	38.26	28.81
CDX78283	Canola	extracellular, plasma membrane	38.26	28.67
CDX96200	Canola	extracellular, plasma membrane	38.26	28.67
CDX78279	Canola	cytosol	35.37	28.57
CDY32785	Canola	cytosol	33.76	28.46
CDY23937	Canola	mitochondrion	35.37	28.42
CDX73431	Canola	endoplasmic reticulum, plasma membrane	37.94	28.37
CDY72604	Canola	extracellular	26.69	28.23
CDY40228	Canola	cytosol, extracellular, nucleus	11.25	28.23
CDX73430	Canola	extracellular, vacuole	37.62	28.19
AT4G10400.1	Thale cress	cytosol	36.98	28.12
CDY22729	Canola	nucleus	20.58	28.07
AT4G10420.1	Thale cress	extracellular, golgi, nucleus	28.94	27.95
CDY40231	Canola	cytosol	37.62	27.86
CDY40225	Canola	endoplasmic reticulum, extracellular	34.73	27.62
CDY41219	Canola	cytosol	14.79	27.22
CDX78281	Canola	cytosol	27.97	27.19
CDY67485	Canola	cytosol	31.51	27.07
CDY41221	Canola	cytosol	28.3	26.91
CDY16725	Canola	cytosol, extracellular, nucleus	21.86	26.56
CDX74515	Canola	cytosol	39.23	26.01
CDX73428	Canola	cytosol, extracellular, plasma membrane	26.69	25.94
CDY40230	Canola	cytosol	15.43	25.81
CDX79668	Canola	cytosol	28.62	25.21
CDY01651	Canola	mitochondrion	25.4	23.37
CDY48142	Canola	cytosol	14.47	22.84
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	30.87	22.64
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	33.12	22.29
CDX73432	Canola	extracellular, plasma membrane	29.58	21.6
CDY41220	Canola	cytosol	10.29	20.13
CDX73429	Canola	mitochondrion	6.75	17.07
CDY55715	Canola	cytosol, nucleus, plasma membrane	18.97	14.39
CDY47798	Canola	plasma membrane	19.29	14.12
CDY53464	Canola	cytosol	18.33	13.97
CDY66257	Canola	mitochondrion	18.97	13.72
CDY09047	Canola	cytosol	19.61	13.53
CDY38511	Canola	cytosol	17.68	13.41
CDX91627	Canola	cytosol	11.25	10.77
CDY27080	Canola	cytosol	11.25	10.29
CDY22940	Canola	plasma membrane	26.69	9.81

Protein Annotations

EnsemblPlants:CDY64738	EnsemblPlantsGene:GSBRNA2T00042644001	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	ProteinID:CDY64738	ProteinID:CDY64738.1	SEG:seg	SUPFAM:SSF52047	UniParc:UPI0004EDFDDA
UniProt:A0A078JB11	MapMan:35.1	:	:	:	:

Description

BnaCnng44720DBnaCnng44720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB11]

Coordinates

chrLK034536:+:6118..7839

Molecular Weight (calculated)

35910.2 Da

IEP (calculated)

6.893

GRAVY (calculated)

0.117

Length

311 amino acids

Sequence
(BLAST)

001: MNRINGLSDD LLVKILSFLP TKVAISTSIF PLRRFLDRSM PLHKASVIES FRLDLAFAGC KPEDIKLWIF IALLDGESFR KILSICPVLE NLLVKLYGGY
101: VNMGMINVSI PSLLRLSLQI PYDGLLDGLV IDTPSLKYLK LEDYDKEYLP SCLIEDLPQL EEAYLDVNYR DVERLIGSIT SLELMITPNL TLIFSTFFIR
201: MQAIYRGKFV FNQLEHLKLC VGINCVSSLP VRLLEDSPNL RELDLFEMDH KRGYMAWWNQ WNQWNQPDTV PKCITSSLQT SAGQGTIWNT TRQRYCGLHL
301: DKRLRFFLML L

Best Arabidopsis Sequence Match ( AT5G38590.2 )
(BLAST)

001: MDKINGLPDD LLVKILSYVP TDIAVSTSIL SKRWEFLWMW LPNLDYTSRW CRKPGDVGLR DFIHKNLPLH RAPVIESLRF HSNSPDIKPE DIRRWIEIAV
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMVCLPS LKTLLLDNVS FVEGKSLQEL LSICPVLEDL SVYCDDYENT KELTIVVPSL
201: LSLSLYIPDE WLLDGYWIDT PSLEYLKLED WNSCDHLSLI KNMPKLREAY VDAKCFLPKS VIESITSVKH LTICSKDGYG DGFVFNQLEH LTLCVCRGDS
301: PSLLGQLLKD SPNLRILEIS VMEDHVDDVG ISLDGWNQPS SVPECLLSSL QIFKWPQYLG RPEDRDIAVY ILKNARHLKK TTILADRCER FVTQRRMIKE
401: LLQALPARIC

Arabidopsis Description

FBD-associated F-box protein At5g38590 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.