CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41219	Canola	cytosol	33.17	81.07
CDY40228	Canola	cytosol, extracellular, nucleus	23.24	77.42
CDY41220	Canola	cytosol	28.81	74.84
CDY72604	Canola	extracellular	53.27	74.83
CDY40230	Canola	cytosol	33.17	73.66
CDX96200	Canola	extracellular, plasma membrane	72.64	72.29
CDX78283	Canola	extracellular, plasma membrane	72.64	72.29
CDX73428	Canola	cytosol, extracellular, plasma membrane	55.69	71.88
CDX73430	Canola	extracellular, vacuole	71.67	71.33
CDX78281	Canola	cytosol	53.51	69.06
CDY40231	Canola	cytosol	68.28	67.14
CDX73431	Canola	endoplasmic reticulum, plasma membrane	67.31	66.83
CDY41221	Canola	cytosol	51.82	65.44
CDX78279	Canola	cytosol	60.53	64.94
CDY40225	Canola	endoplasmic reticulum, extracellular	61.26	64.71
AT3G54910.2	Thale cress	cytosol	55.93	61.93
CDY67485	Canola	cytosol	51.33	58.56
CDY32785	Canola	cytosol	52.06	58.27
CDX79668	Canola	cytosol	48.67	56.94
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	63.68	56.93
CDX73429	Canola	mitochondrion	16.95	56.91
CDY17463	Canola	cytosol	40.19	55.7
CDX84569	Canola	mitochondrion	35.11	54.92
CDX84780	Canola	cytosol	22.76	51.65
CDY40226	Canola	cytosol	12.83	50.96
CDY23937	Canola	mitochondrion	44.55	47.55
CDY48142	Canola	cytosol	21.31	44.67
CDY16725	Canola	cytosol, extracellular, nucleus	27.36	44.14
CDX73432	Canola	extracellular, plasma membrane	45.04	43.66
CDY52958	Canola	cytosol	20.34	41.38
CDY01651	Canola	mitochondrion	33.66	41.12
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	41.4	40.33
CDX74515	Canola	cytosol	45.76	40.3
CDY35566	Canola	cytosol	12.83	38.69
CDY64738	Canola	extracellular, nucleus, peroxisome	28.81	38.26
CDY34607	Canola	cytosol	12.83	37.32
CDY35372	Canola	cytosol	6.54	27.55
CDY22729	Canola	nucleus	15.01	27.19
CDY47798	Canola	plasma membrane	17.43	16.94
CDY55715	Canola	cytosol, nucleus, plasma membrane	16.71	16.83
CDY09047	Canola	cytosol	17.68	16.19
CDY53464	Canola	cytosol	15.98	16.18
CDY38511	Canola	cytosol	15.25	15.37
CDY66257	Canola	mitochondrion	15.74	15.12
CDY22940	Canola	plasma membrane	30.75	15.01
CDX91627	Canola	cytosol	9.69	12.31
CDY27080	Canola	cytosol	9.44	11.47

Protein Annotations

EnsemblPlants:CDY41224	EnsemblPlantsGene:GSBRNA2T00072644001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	ProteinID:CDY41224	ProteinID:CDY41224.1	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE2C7D	UniProt:A0A078HV45	MapMan:35.1	:

Description

BnaC08g26340DBnaC08g26340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV45]

Coordinates

chrLK032493:-:192996..194391

Molecular Weight (calculated)

47842.3 Da

IEP (calculated)

4.935

GRAVY (calculated)

0.005

Length

413 amino acids

Sequence
(BLAST)

001: MDRISGLSDE LLIKIILFVP TKVAVSTSIL SKRWEYLWMW LPKLEYGHRD CSESECEKLR CFLDRNLPLH RAPDIESFRL ELCNSRFKPE NISMWVVVAL
101: SHCLRELDIS YESYPEKPDI LPSNLYTCKS LVVLKLEGDI LLDVPRMVSL PSLKTLMLQR VRYLNDETLQ RLLSNCPILE DLVVRLREYG DTMQKLTVVV
201: PSLQRLTLYI PYGHELYEYV IDTPSLKYFE LVDYIDNDHY GLIENMPYLI EAYVDCCCPD IYSLMGSNTS VKRLTICSVA ILDGLVFNEL EHLEVCLCTV
301: LFSNQLVQLL NASSKLKRLD ISLMDGHVPR YMDDWNRPST VPECLLSSLQ SLNWLEYTGE PQERDIVVYI LKHARHLKTA TITSFESDVP KFEMIKELAL
401: SPRASTTCQL VFE

Best Arabidopsis Sequence Match ( AT4G10400.2 )
(BLAST)

001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS

Arabidopsis Description

FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.