CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028194.1-P	Field mustard	cytosol	48.83	77.89
CDY01651	Canola	mitochondrion	49.25	68.34
CDX84780	Canola	cytosol	26.44	68.13
CDY23937	Canola	mitochondrion	52.88	64.08
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	44.56	55.15
CDY17463	Canola	cytosol	33.26	52.35
CDY41219	Canola	cytosol	18.76	52.07
CDY35566	Canola	cytosol	14.07	48.18
CDY52958	Canola	cytosol	20.47	47.29
CDY32785	Canola	cytosol	36.89	46.88
AT5G38565.1	Thale cress	cytosol, peroxisome, plastid	34.75	46.7
CDY67485	Canola	cytosol	35.61	46.13
CDY72604	Canola	extracellular	28.78	45.92
CDY41224	Canola	cytosol, plasma membrane	40.3	45.76
CDY40231	Canola	cytosol	40.51	45.24
CDX79668	Canola	cytosol	33.9	45.04
CDX84569	Canola	mitochondrion	25.16	44.7
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	40.3	44.58
CDY40230	Canola	cytosol	17.48	44.09
CDX78283	Canola	extracellular, plasma membrane	38.81	43.86
CDX96200	Canola	extracellular, plasma membrane	38.81	43.86
CDX73430	Canola	extracellular, vacuole	38.81	43.86
CDX73431	Canola	endoplasmic reticulum, plasma membrane	38.59	43.51
CDY40225	Canola	endoplasmic reticulum, extracellular	36.25	43.48
CDX73428	Canola	cytosol, extracellular, plasma membrane	29.64	43.44
CDY41221	Canola	cytosol	30.06	43.12
CDX78281	Canola	cytosol	28.36	41.56
CDY40226	Canola	cytosol	9.17	41.35
CDX78279	Canola	cytosol	33.26	40.52
CDY34607	Canola	cytosol	12.15	40.14
CDX73429	Canola	mitochondrion	10.45	39.84
CDY64738	Canola	extracellular, nucleus, peroxisome	26.01	39.23
CDY35372	Canola	cytosol	8.1	38.78
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	37.53	38.1
CDY40228	Canola	cytosol, extracellular, nucleus	8.74	33.06
CDY16725	Canola	cytosol, extracellular, nucleus	17.91	32.81
CDY48142	Canola	cytosol	13.01	30.96
CDY41220	Canola	cytosol	10.23	30.19
CDX73432	Canola	extracellular, plasma membrane	27.29	30.05
CDY22729	Canola	nucleus	13.86	28.51
CDY53464	Canola	cytosol	15.99	18.38
CDY38511	Canola	cytosol	15.56	17.8
CDY55715	Canola	cytosol, nucleus, plasma membrane	15.56	17.8
CDY47798	Canola	plasma membrane	15.78	17.41
CDY66257	Canola	mitochondrion	14.71	16.05
CDY09047	Canola	cytosol	15.35	15.96
CDX91627	Canola	cytosol	10.45	15.08
CDY27080	Canola	cytosol	10.23	14.12
CDY22940	Canola	plasma membrane	21.96	12.17

Protein Annotations

EnsemblPlants:CDX74515	EnsemblPlantsGene:GSBRNA2T00114424001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF00646	PFAM:PF08387	ProteinID:CDX74515	ProteinID:CDX74515.1
SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EEEE5F	MapMan:35.1	:

Description

BnaA04g08740D

Coordinates

chrLK031801:+:1035667..1037387

Molecular Weight (calculated)

53323.5 Da

IEP (calculated)

5.841

GRAVY (calculated)

0.022

Length

469 amino acids

Sequence
(BLAST)

001: MQEPKESHGA ALKQVLRYLR GTCSLELYFA CGKGLKLECY SDASYNVDDD DGKSTTGHVF YLGDSPISWT RKRKAKRSNL CRGQVRVCND DVSRISDLSN
101: ELLIKILSFL PTKVAVSTSI LSKQWQFLWM WLPKLEYSSL RYCSAIGEFI DKYLPLHRSP VIERLKLSVE PIQPEDIKRW VDIAVSRCVR DLIFIIVQRI
201: KIYFPAAFTP AIHDESLQGL LDICPVLEDL SVLLRGECSM GEISVIVPTL QRLSLSVSCS CYLDGYVIDT PSLKYLKLED WNNSAHDVEI RDMPELREAY
301: VDVVFFVLKS VIGSITSLKH LTICSEDDVY GGGFVFNQLE HLELCVCKDN SSDLLGQLLK DSPNLRVLDI YHKGDTDMVC WNQPSLVPQC LLSSLQIFNW
401: SGYFGRQQER DIAVHILKNA CVLNKVTIFA DIVQYSVPHL KMIKELAFSS RASSTCELVF VECPYEMFD

Best Arabidopsis Sequence Match ( AT5G38570.1 )
(BLAST)

001: MDNINGLPDD LLVKILSFVP TYVAVSTCVL SKRWEFLWMW LPNLEFVSPW DSRPGIVDFI NKKLPIHRAP VIERLCIHIN SNPHIKPEYI KRWIEIAVSH
101: YVRELQIDYH SKTKITLQLE AESYFIDGKY LQQLISGCPV LEDLSLRFCC NDNLREFTVI IPSLQSLSLF LFGNSNLNRY KIDTPSLKYL KLEDWNDPEH
201: YSWTNMPKLR EAYVDVESSN HLKTLIGSIT SVKHLTICCL EDYLYGDGFI FNHLEHLKLC MCPFDSSNLL GQLLKGSPNL QVLDIFEMKR NDIVCWNQPS
301: SVLECLLSSL KILNWSAYFG RPQDRDIAVY ILKNACHLKT ATFLTDKRIN DVRRLKMIKE LRLSPRASST CQLVFGEDF

Arabidopsis Description

Putative FBD-associated F-box protein At5g38570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.