CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78281	Canola	cytosol	70.6	91.56
CDY41224	Canola	cytosol, plasma membrane	71.33	71.67
CDY41219	Canola	cytosol	28.92	71.01
CDX78283	Canola	extracellular, plasma membrane	69.4	69.4
CDX96200	Canola	extracellular, plasma membrane	69.4	69.4
CDY72604	Canola	extracellular	48.67	68.71
CDY41221	Canola	cytosol	53.25	67.58
CDY40231	Canola	cytosol	67.71	66.9
CDX73431	Canola	endoplasmic reticulum, plasma membrane	66.27	66.11
CDX78279	Canola	cytosol	60.96	65.71
CDX73428	Canola	cytosol, extracellular, plasma membrane	50.6	65.62
CDY41220	Canola	cytosol	25.06	65.41
CDY40230	Canola	cytosol	28.92	64.52
CDY40225	Canola	endoplasmic reticulum, extracellular	60.72	64.45
AT3G54910.2	Thale cress	cytosol	56.39	62.73
CDX73429	Canola	mitochondrion	18.07	60.98
CDY40228	Canola	cytosol, extracellular, nucleus	18.07	60.48
CDY17463	Canola	cytosol	40.96	57.05
CDY67485	Canola	cytosol	49.64	56.91
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	63.13	56.71
CDY32785	Canola	cytosol	50.36	56.64
CDY40226	Canola	cytosol	13.98	55.77
CDX79668	Canola	cytosol	47.23	55.52
CDX84569	Canola	mitochondrion	33.98	53.41
CDX84780	Canola	cytosol	23.13	52.75
CDY23937	Canola	mitochondrion	44.1	47.29
CDX73432	Canola	extracellular, plasma membrane	46.51	45.31
CDY52958	Canola	cytosol	20.48	41.87
CDY48142	Canola	cytosol	19.76	41.62
CDY35566	Canola	cytosol	13.49	40.88
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	41.2	40.33
CDY16725	Canola	cytosol, extracellular, nucleus	24.58	39.84
CDY01651	Canola	mitochondrion	31.81	39.05
CDX74515	Canola	cytosol	43.86	38.81
CDY64738	Canola	extracellular, nucleus, peroxisome	28.19	37.62
CDY34607	Canola	cytosol	12.53	36.62
CDY35372	Canola	cytosol	8.19	34.69
CDY22729	Canola	nucleus	15.9	28.95
CDY53464	Canola	cytosol	16.87	17.16
CDY55715	Canola	cytosol, nucleus, plasma membrane	16.87	17.07
CDY47798	Canola	plasma membrane	17.11	16.71
CDY09047	Canola	cytosol	17.35	15.96
CDY38511	Canola	cytosol	14.94	15.12
CDY66257	Canola	mitochondrion	15.42	14.88
CDY22940	Canola	plasma membrane	30.12	14.78
CDX91627	Canola	cytosol	10.12	12.92
CDY27080	Canola	cytosol	9.88	12.06

Protein Annotations

EnsemblPlants:CDX73430	EnsemblPlantsGene:GSBRNA2T00108927001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	ProteinID:CDX73430	ProteinID:CDX73430.1	SEG:seg
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EF3405	MapMan:35.1	:

Description

BnaC08g25730D

Coordinates

chrLK031799:+:315028..316755

Molecular Weight (calculated)

47247.1 Da

IEP (calculated)

5.193

GRAVY (calculated)

0.056

Length

415 amino acids

Sequence
(BLAST)

001: MDIISGLPDE LLIKILMLVP TKVAVSTTIL SKRWERLWMW LTKLDYGPRN CSESECEKLR CFLDRNLPLH RAPVLESFRL DLCCSRFKPP ETINMWIGIA
101: VSHCLRELEM MLYESDPAKP FVLPSNLYAC KSLVVLKLGG DILLDVPTMA SLPSLKTMEL QSVRYFSDKT LPLLLSKCPL LEDLVVDLRE DDTPRYLGVV
201: VPSLQSLSLY IPYNNHIIDG FVLVTPALKY FKLMDYNEHY CLIENMPNLI EAYLDVDCPD IKDLIGSITS VKRLSICSKD MLDEGFVFNQ LEHLEVCLCM
301: EHSSNQLFRL LKASSNLKRL DISLMRGHVS QGMDDWNQPT TVPECLLSSM QTLNLSEYTG EPQEREIVVY ILKHAVHLKT ATIKSSSELG VPKSEMLKEL
401: ELSSRASAAC QLMFE

Best Arabidopsis Sequence Match ( AT3G54910.2 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.