CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22729	Canola	nucleus	38.36	75.88
CDY47798	Canola	plasma membrane	47.01	49.88
CDY35372	Canola	cytosol	9.76	44.9
CDY34607	Canola	cytosol	13.53	42.96
AT4G00315.1	Thale cress	cytosol	41.69	42.63
AT1G55660.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	43.46	39.84
CDY55715	Canola	cytosol, nucleus, plasma membrane	34.37	37.8
CDY38511	Canola	cytosol	34.15	37.56
CDY53464	Canola	cytosol	33.92	37.5
CDY35566	Canola	cytosol	11.09	36.5
CDY27080	Canola	cytosol	27.05	35.88
CDX91627	Canola	cytosol	25.5	35.38
CDY41219	Canola	cytosol	13.08	34.91
CDX84780	Canola	cytosol	13.53	33.52
CDY40230	Canola	cytosol	12.86	31.18
CDY40226	Canola	cytosol	7.1	30.77
CDY17463	Canola	cytosol	19.51	29.53
CDY66257	Canola	mitochondrion	26.61	27.91
CDX84569	Canola	mitochondrion	15.3	26.14
CDY72604	Canola	extracellular	16.85	25.85
CDY22940	Canola	plasma membrane	47.67	25.41
CDX73429	Canola	mitochondrion	6.87	25.2
CDY32785	Canola	cytosol	20.18	24.66
CDY67485	Canola	cytosol	19.51	24.31
CDX73428	Canola	cytosol, extracellular, plasma membrane	16.41	23.12
CDX78281	Canola	cytosol	16.41	23.12
CDY41221	Canola	cytosol	16.63	22.94
CDY52958	Canola	cytosol	9.09	20.2
CDY64738	Canola	extracellular, nucleus, peroxisome	13.53	19.61
CDY23937	Canola	mitochondrion	16.19	18.86
CDY40225	Canola	endoplasmic reticulum, extracellular	16.19	18.67
CDY40231	Canola	cytosol	17.07	18.33
CDX73431	Canola	endoplasmic reticulum, plasma membrane	16.63	18.03
CDY41224	Canola	cytosol, plasma membrane	16.19	17.68
CDX78279	Canola	cytosol	15.08	17.66
CDX78283	Canola	extracellular, plasma membrane	16.19	17.59
CDX96200	Canola	extracellular, plasma membrane	16.19	17.59
CDX73430	Canola	extracellular, vacuole	15.96	17.35
CDY16725	Canola	cytosol, extracellular, nucleus	9.76	17.19
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	15.52	16.51
CDX79668	Canola	cytosol	12.86	16.43
CDY01651	Canola	mitochondrion	12.2	16.27
CDY48142	Canola	cytosol	6.87	15.74
CDX74515	Canola	cytosol	15.96	15.35
CDX73432	Canola	extracellular, plasma membrane	14.41	15.26
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	13.97	13.64
CDY40228	Canola	cytosol, extracellular, nucleus	3.33	12.1
CDY41220	Canola	cytosol	0.67	1.89

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078F7H0	EnsemblPlants:CDY09047	ProteinID:CDY09047	ProteinID:CDY09047.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00001205001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08387
PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EE841E	:	:	:	:	:

Description

BnaC08g10010DBnaC08g10010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7H0]

Coordinates

chrLK031992:+:144614..146543

Molecular Weight (calculated)

51956.3 Da

IEP (calculated)

5.235

GRAVY (calculated)

-0.159

Length

451 amino acids

Sequence
(BLAST)

001: MDDRISQLPD DLLLKVLSFL PTKVAVSTSI LSKRWEFLWM CLPLHKAPVI ESLRLNFDVC NRFDPIYSDD IEKWVLTAVS RCVHELSVTL ASMHYELAGL
101: PSSLFTCKSL VILELTGKIF VNFPRMDLVV EHNKDDNNTP FTLSVIVPSL QTLTLKISRG SDHSEGLVIN TPSLKYFNIL YYVEEYARDD DSNYSYYLED
201: TPKLEEADIE STYPDINKFV RSIRAVKRLS LCIRVNTEEA LYHEGIVFDQ LQHLKLCSCG SNWSKVLVRL LKDSPLLRDL EVYLNDDHTY SRVDAPVSWQ
301: NQLDCVPTCL LASLETFKWT VVYGSHEEID LVKYILRNAR CLKAAKILFR PPFCQQEEDK LEMAKQDLSL SFRGVHLYNY LCSQAIELTE EGCVSEVKYK
401: IVLHTLVETL KNCVDLNNAR NNITESNSQL INGSQEEDDR YAWAKGRIRY C

Best Arabidopsis Sequence Match ( AT4G15060.2 )
(BLAST)

001: MSTVRESWLK PKKNIQTNLG DYEDMDKISR LPDDLLVKVL LFLPTKIAVS TSILSKRWEF LWMWLPKLEY HNTNYSASEE QRLRSFINLN LQLHRAPIIE
101: SLRLKFSLGR SIKPQNIKQW IIIAVFRCVR ELSINLFPLY CIENPAKLPS SLYISKSLVI LKLKDQILVD VPRMAYLPSL KYLLLKRVTY KDSNSLHQLL
201: SSCPVLKNLV VERDEYNHDE TLSITVSSLQ RLTLKISRGG SFDELVINTP SLKYFKLTDY LGECETELDD DSYSYVFKDM PKLEEAHIDS TYPDIGKFVR
301: SITSVKRLSL CVKVNAEEAL YREGICFKQL EHLKLCPCDS NWSKLLARLL KDSPNLRELE IKLNKDHKAS FDDPACLENQ LNYVVQSSIP SLERFTWTWI
401: YGSQNEIDYL EKLKKRLLLT NWQNLV

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Re /.../omains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G15060]
SUBAcon: [cytosol,nucleus,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.