CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91627	Canola	cytosol	85.59	89.54
Bra022582.1-P	Field mustard	cytosol	90.88	77.64
AT5G56700.2	Thale cress	cytosol	47.94	45.28
AT5G56690.1	Thale cress	endoplasmic reticulum	52.94	44.78
CDY38511	Canola	cytosol	52.06	43.17
CDY53464	Canola	cytosol	51.47	42.89
CDY55715	Canola	cytosol, nucleus, plasma membrane	49.41	40.98
CDY34607	Canola	cytosol	16.47	39.44
CDY47798	Canola	plasma membrane	42.35	33.88
CDY66257	Canola	mitochondrion	40.29	31.86
CDY22729	Canola	nucleus	20.0	29.82
CDY35372	Canola	cytosol	8.53	29.59
CDY09047	Canola	cytosol	35.88	27.05
CDY35566	Canola	cytosol	10.88	27.01
CDX84780	Canola	cytosol	12.65	23.63
CDY41219	Canola	cytosol	10.88	21.89
CDY40230	Canola	cytosol	11.18	20.43
CDY22940	Canola	plasma membrane	47.06	18.91
CDX73429	Canola	mitochondrion	6.18	17.07
CDY17463	Canola	cytosol	14.71	16.78
CDX84569	Canola	mitochondrion	12.35	15.91
CDY48142	Canola	cytosol	8.82	15.23
CDY32785	Canola	cytosol	15.59	14.36
CDY67485	Canola	cytosol	14.71	13.81
CDY40226	Canola	cytosol	4.12	13.46
CDY72604	Canola	extracellular	11.47	13.27
CDX78281	Canola	cytosol	12.06	12.81
CDY52958	Canola	cytosol	7.65	12.81
CDX73428	Canola	cytosol, extracellular, plasma membrane	11.47	12.19
CDY41221	Canola	cytosol	11.47	11.93
CDY01651	Canola	mitochondrion	11.76	11.83
CDY23937	Canola	mitochondrion	12.94	11.37
CDY64738	Canola	extracellular, nucleus, peroxisome	10.29	11.25
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	13.82	11.08
CDY16725	Canola	cytosol, extracellular, nucleus	8.24	10.94
CDY40225	Canola	endoplasmic reticulum, extracellular	12.35	10.74
CDX96200	Canola	extracellular, plasma membrane	12.65	10.36
CDX78283	Canola	extracellular, plasma membrane	12.65	10.36
CDX74515	Canola	cytosol	14.12	10.23
CDX78279	Canola	cytosol	11.47	10.13
CDX73430	Canola	extracellular, vacuole	12.06	9.88
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	13.24	9.74
CDX73432	Canola	extracellular, plasma membrane	12.06	9.62
CDX73431	Canola	endoplasmic reticulum, plasma membrane	11.76	9.62
CDY40231	Canola	cytosol	11.76	9.52
CDY41224	Canola	cytosol, plasma membrane	11.47	9.44
CDX79668	Canola	cytosol	9.12	8.78
CDY40228	Canola	cytosol, extracellular, nucleus	0.88	2.42
CDY41220	Canola	cytosol	0.88	1.89

Protein Annotations

EnsemblPlants:CDY27080	EnsemblPlantsGene:GSBRNA2T00036900001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	ProteinID:CDY27080	ProteinID:CDY27080.1	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EE5B67	UniProt:A0A078GKL7	MapMan:35.1	:	:

Description

BnaA02g11000DBnaA02g11000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKL7]

Coordinates

chrLK032199:+:400828..402653

Molecular Weight (calculated)

39013.4 Da

IEP (calculated)

7.107

GRAVY (calculated)

-0.062

Length

340 amino acids

Sequence
(BLAST)

001: MDKISGLSDD LLVKILSFVP TKVAVSTTVM SKRWECLWMW VPTLEYDDFE DINTDIKDMY RVSVHKNLIS HRAPIIESLR LKFCLGSLQP EDIKQWVSIA
101: VSRCVRPDSA LPSSLYTSKT LVTLKLEGNK ILVDVPPTVC LPSLTTLQLS CVTYLDEASL RMLLSNCPVL EDLVIERDTA DDNAKGLVVA VPSLQRLSLQ
201: IDGGCCSYDG ICRNWKRQIS LLILFNNEEE SMYCSCIVFS QLKRLKLSIC NDDWSKLLFR LLKDSPKLRV LNLHRASRYQ RFDEYERSSW DNEWSVTPNC
301: LLKTLETFEY SGCMGRPEER AFLSFFFNNA RCLKSTSILR

Best Arabidopsis Sequence Match ( AT5G56690.1 )
(BLAST)

001: MAEISGLPDD LLVKILAFLP TKVAISTSVL SKQWRFLWMW LPKLKYDDYD DITDGFNSVS AFQTYRDFIA KNLPLHRAPI IESLSLGFRC GTLQPEDLKS
101: WVEVAVSRSV RELSILAYYR NNYALSSSSL YTCKSLVTLK GFNIRVDVPP TVCLLPSLRT LELKRVRYLN EDSLRMLLSF CPVLEYLSIE RHDNDNLRGL
201: VVDVPSLRRL SLTSYTGCSS DDYVIVTPSL KYFKAFDYRS EISSYKIEKI PELEEADISI ERNPEKLFVY FKSIKCLSLQ VDFNSKEEPG YDSGIVFNHL
301: EELTPYINDA NWSKLLFRLL NDSPKLRVLE ISNSKSFYKE KIGEYLPVSW SKNQGSVPKC FLNSLETFRV KWYYSEEQED RDFLSLIFKH ARCLKSTSIL
401: HR

Arabidopsis Description

Putative FBD-associated F-box protein At5g56690 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJU3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.