CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 2
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35372	Canola	cytosol	22.44	93.88
Bra032036.1-P	Field mustard	cytosol	37.8	85.64
CDY53464	Canola	cytosol	74.88	75.25
CDY38511	Canola	cytosol	63.66	63.66
AT2G26860.2	Thale cress	cytosol	58.05	58.77
CDY27080	Canola	cytosol	40.98	49.41
CDX91627	Canola	cytosol	38.78	48.92
CDY34607	Canola	cytosol	16.1	46.48
CDY22729	Canola	nucleus	23.9	42.98
CDY47798	Canola	plasma membrane	40.24	38.82
CDY66257	Canola	mitochondrion	39.76	37.91
CDY35566	Canola	cytosol	12.2	36.5
CDY09047	Canola	cytosol	37.8	34.37
CDX84780	Canola	cytosol	14.39	32.42
CDY41219	Canola	cytosol	12.2	29.59
CDX73429	Canola	mitochondrion	8.05	26.83
CDY40230	Canola	cytosol	11.95	26.34
CDY17463	Canola	cytosol	18.78	25.84
CDY40226	Canola	cytosol	6.1	24.04
CDY72604	Canola	extracellular	17.07	23.81
CDY52958	Canola	cytosol	11.71	23.65
CDX84569	Canola	mitochondrion	14.88	23.11
CDX73428	Canola	cytosol, extracellular, plasma membrane	17.32	22.19
CDY32785	Canola	cytosol	19.51	21.68
CDX78281	Canola	cytosol	16.83	21.56
CDY67485	Canola	cytosol	18.78	21.27
CDY22940	Canola	plasma membrane	43.17	20.92
CDY41221	Canola	cytosol	16.34	20.49
CDY64738	Canola	extracellular, nucleus, peroxisome	14.39	18.97
CDY40225	Canola	endoplasmic reticulum, extracellular	17.8	18.67
CDY23937	Canola	mitochondrion	16.83	17.83
CDY16725	Canola	cytosol, extracellular, nucleus	10.98	17.58
CDX78279	Canola	cytosol	16.1	17.14
CDX73430	Canola	extracellular, vacuole	17.07	16.87
CDY41224	Canola	cytosol, plasma membrane	16.83	16.71
CDX73431	Canola	endoplasmic reticulum, plasma membrane	16.83	16.59
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	17.07	16.51
CDX78283	Canola	extracellular, plasma membrane	16.59	16.39
CDX96200	Canola	extracellular, plasma membrane	16.59	16.39
CDY40231	Canola	cytosol	16.34	15.95
CDX74515	Canola	cytosol	17.8	15.56
CDX73432	Canola	extracellular, plasma membrane	15.37	14.79
CDY48142	Canola	cytosol	7.07	14.72
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	16.59	14.72
CDY40228	Canola	cytosol, extracellular, nucleus	4.39	14.52
CDX79668	Canola	cytosol	12.2	14.16
CDY01651	Canola	mitochondrion	11.46	13.91
CDY41220	Canola	cytosol	0.49	1.26

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078IZ46	EnsemblPlants:CDY55715	ProteinID:CDY55715	ProteinID:CDY55715.1
InterPro:F-box-like_dom_sf	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00017218001
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF07723	PFAM:PF08387	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EC8BF4	:	:

Description

BnaC04g37630DBnaC04g37630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZ46]

Coordinates

chrLK033422:+:54863..56266

Molecular Weight (calculated)

47480.6 Da

IEP (calculated)

5.196

GRAVY (calculated)

0.119

Length

410 amino acids

Sequence
(BLAST)

001: MDRISGLSDE LLVRILTFVP TKFAVSTSIL SKRWEFVWTW VPKLEFVDNK YGSDLAIRDF ISMNLPLLKP PVIESFLLKC FSSFPPEDIT RWVATTVSRC
101: IVELDIDCVY CWSGEPCLLL PSSLYTCESL VTLKLNGEKI LLDVPRTVSL PILKTLHLGR VTYLNNDCFR LLISYCPALE DLVIERNGQD NMKTVAVISP
201: SLQRLTLPIG HGLSPFVEEY VIVTPSLKYF KVEEYMLNYS YLVRHMPEVE EADINVQYYL FSIFDSITSV KRLSLCVSFN IISDEYMYHD GIFFNRLERL
301: KLCIRFDYWS KLLFRLLHDS PNLRVLNLCV SKYIRFKKYE LINWNSSEIS VPSCLLESLE TFEFAEYRGS REERDFVSFI IRHACHLKSS TITPCTGIET
401: DSVSESSDEC

Best Arabidopsis Sequence Match ( AT2G26860.2 )
(BLAST)

001: MDRISGLPDE LLVEILHCLP TKEVVSTSIL SKRWEFLWLW VPKLTFVMNH YESDLPIQDF ITKNLRLLKP QVIESFHLQC FSSSFKPEDI KHWVVTTISR
101: RVRELIINYC DLSWLDKPVV LLDLPNSLYT CTSLVTLKLI GHSIIVDVPR TVSLPCLKTL ELDSVAYSNE ESLRLLLSYC PVLEDLTIHR DMHDNVKTLV
201: IIVPSLLRLN LPIDGAYSCD GYVIVTPALK YLKVPGLYRE DFSYLLTHMP NVEEADLSVE QDVERLFESI TSVKRLSLFV LLDIEDESMY HNGIYFNQLE
301: HLNLHIYRDN WSKLLVRLLE DSPKLRVLKI VVDGEPSFDE EFEHVSWIYN DESSVPKCLL DSLEVFEFAG YTRRPEERDF VSFILKHACH LKSSSISRLS
401: CYVLE

Arabidopsis Description

FBD-associated F-box protein At2g26860 [Source:UniProtKB/Swiss-Prot;Acc:Q84X02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.