Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72604 | Canola | extracellular | 65.14 | 72.45 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 69.42 | 70.94 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 26.3 | 69.35 |
| CDX78281 | Canola | cytosol | 67.58 | 69.06 |
| CDY40231 | Canola | cytosol | 87.77 | 68.33 |
| CDY41219 | Canola | cytosol | 33.33 | 64.5 |
| CDY40230 | Canola | cytosol | 34.25 | 60.22 |
| CDX84569 | Canola | mitochondrion | 45.87 | 56.82 |
| CDX78279 | Canola | cytosol | 65.75 | 55.84 |
| CDX73429 | Canola | mitochondrion | 20.8 | 55.28 |
| AT3G54910.2 | Thale cress | cytosol | 62.39 | 54.69 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 68.2 | 53.61 |
| CDX73430 | Canola | extracellular, vacuole | 67.58 | 53.25 |
| CDY40226 | Canola | cytosol | 16.82 | 52.88 |
| CDX96200 | Canola | extracellular, plasma membrane | 66.06 | 52.05 |
| CDX78283 | Canola | extracellular, plasma membrane | 66.06 | 52.05 |
| CDY41224 | Canola | cytosol, plasma membrane | 65.44 | 51.82 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 60.24 | 50.38 |
| CDX84780 | Canola | cytosol | 27.83 | 50.0 |
| CDY41220 | Canola | cytosol | 22.02 | 45.28 |
| CDY67485 | Canola | cytosol | 48.32 | 43.65 |
| CDY32785 | Canola | cytosol | 48.62 | 43.09 |
| CDX79668 | Canola | cytosol | 46.18 | 42.78 |
| CDY48142 | Canola | cytosol | 25.69 | 42.64 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 32.72 | 41.8 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 58.72 | 41.56 |
| CDY17463 | Canola | cytosol | 36.09 | 39.6 |
| CDY35566 | Canola | cytosol | 16.51 | 39.42 |
| CDX73432 | Canola | extracellular, plasma membrane | 50.15 | 38.5 |
| CDY52958 | Canola | cytosol | 22.32 | 35.96 |
| CDY23937 | Canola | mitochondrion | 41.59 | 35.14 |
| CDY34607 | Canola | cytosol | 14.98 | 34.51 |
| CDY35372 | Canola | cytosol | 9.48 | 31.63 |
| CDX74515 | Canola | cytosol | 43.12 | 30.06 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 26.91 | 28.3 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 36.09 | 27.83 |
| CDY22729 | Canola | nucleus | 18.96 | 27.19 |
| CDY01651 | Canola | mitochondrion | 27.22 | 26.33 |
| CDY47798 | Canola | plasma membrane | 22.63 | 17.41 |
| CDY09047 | Canola | cytosol | 22.94 | 16.63 |
| CDY53464 | Canola | cytosol | 20.49 | 16.42 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 20.49 | 16.34 |
| CDY38511 | Canola | cytosol | 18.65 | 14.88 |
| CDY22940 | Canola | plasma membrane | 38.23 | 14.78 |
| CDY66257 | Canola | mitochondrion | 18.96 | 14.42 |
| CDX91627 | Canola | cytosol | 11.93 | 12.0 |
| CDY27080 | Canola | cytosol | 11.93 | 11.47 |
Protein Annotations
| EnsemblPlants:CDY41221 | EnsemblPlantsGene:GSBRNA2T00072641001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF07723 | PFAM:PF08387 | ProteinID:CDY41221 |
| ProteinID:CDY41221.1 | SEG:seg | SMART:SM00579 | SUPFAM:SSF52047 | UniParc:UPI0004EF0A8A | UniProt:A0A078HU46 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC08g26370DBnaC08g26370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU46]
Coordinates
chrLK032493:-:180651..181799
Molecular Weight (calculated)
37219.5 Da
IEP (calculated)
4.887
GRAVY (calculated)
0.165
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MWVSTAVSHC LRELDILHDD TEPAKSNILP SNLFTCKSLV ILKLVGEILL DVPRVVSLPS LKTLKLQSVR YFDEETLLRL LSNCPILEDL VVDLRDYDYD
101: YTGKLSIVVP SLQSLSLFIP YRREIDGFVI ETPNLKYFKL MDHSISDHYC LIEKMPCLIE AYLEVNLPDM KSIIGSITSV KRLAICSEAI MMLGEGFVFN
201: QLEHLEVCFC TLFSSDRVIE LLLKASSNLK RLDFSFMDHH VPQGMVYWNQ PTTVPECILS SLQSFSWSKY TGEPEERDIV VYILKNALHL KTATIKSSES
301: SAVPKFEMLE ELALSPRASA TCQLMFD
101: YTGKLSIVVP SLQSLSLFIP YRREIDGFVI ETPNLKYFKL MDHSISDHYC LIEKMPCLIE AYLEVNLPDM KSIIGSITSV KRLAICSEAI MMLGEGFVFN
201: QLEHLEVCFC TLFSSDRVIE LLLKASSNLK RLDFSFMDHH VPQGMVYWNQ PTTVPECILS SLQSFSWSKY TGEPEERDIV VYILKNALHL KTATIKSSES
301: SAVPKFEMLE ELALSPRASA TCQLMFD
001: MWVVVVLSRY VRELEIYSSC YQDKQNILPS SLYTCKSLVI LKLNGGILMD VPRMVCLPSL KTLVLKGVNY FKQESLQRLL SNCPVLEDLV VNLCHHDNMG
101: KFIVIVPSLQ RLSLYIGYKR VLDEFVIDTP SLEYFKLVDR NYDSHPCLIE NMPKLTEAYV DVRSTDLQSL IGSITSVKRL IISSKAMFGD GYIFNRLERL
201: TLHVLEENPS NLLSQFLKDS PNLQELEYFS ELDDSYENMR MFPWNQPSIV PECLLSSLQK FTWSQYLGRT QDRDIAVYIL KNACCLRNAT IDSYTCLVPE
301: LKMIKELTRS SRASTTCELN FS
101: KFIVIVPSLQ RLSLYIGYKR VLDEFVIDTP SLEYFKLVDR NYDSHPCLIE NMPKLTEAYV DVRSTDLQSL IGSITSVKRL IISSKAMFGD GYIFNRLERL
201: TLHVLEENPS NLLSQFLKDS PNLQELEYFS ELDDSYENMR MFPWNQPSIV PECLLSSLQK FTWSQYLGRT QDRDIAVYIL KNACCLRNAT IDSYTCLVPE
301: LKMIKELTRS SRASTTCELN FS
Arabidopsis Description
FBD / Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:F4JLN7]
SUBAcon: [golgi,extracellular,nucleus]
SUBAcon: [golgi,extracellular,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.