CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41219	Canola	cytosol	27.93	70.41
CDY40230	Canola	cytosol	28.4	65.05
CDY72604	Canola	extracellular	38.73	56.12
CDX73429	Canola	mitochondrion	15.73	54.47
CDX78281	Canola	cytosol	40.85	54.38
CDY40226	Canola	cytosol	13.15	53.85
CDX78279	Canola	cytosol	47.65	52.73
CDX73428	Canola	cytosol, extracellular, plasma membrane	39.2	52.19
CDY41221	Canola	cytosol	38.5	50.15
CDX73430	Canola	extracellular, vacuole	45.31	46.51
CDX84780	Canola	cytosol	19.72	46.15
CDY41224	Canola	cytosol, plasma membrane	43.66	45.04
CDX78283	Canola	extracellular, plasma membrane	43.19	44.34
CDX96200	Canola	extracellular, plasma membrane	43.19	44.34
CDY40225	Canola	endoplasmic reticulum, extracellular	40.38	43.99
CDY40231	Canola	cytosol	41.55	42.14
CDX73431	Canola	endoplasmic reticulum, plasma membrane	40.85	41.83
AT3G54910.2	Thale cress	cytosol	36.62	41.82
CDX84569	Canola	mitochondrion	25.59	41.29
CDY17463	Canola	cytosol	28.4	40.6
CDY32785	Canola	cytosol	31.92	36.86
CDY40228	Canola	cytosol, extracellular, nucleus	10.56	36.29
CDY23937	Canola	mitochondrion	32.39	35.66
CDY67485	Canola	cytosol	30.05	35.36
CDY35566	Canola	cytosol	11.27	35.04
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	37.79	34.85
CDY34607	Canola	cytosol	11.03	33.1
CDX79668	Canola	cytosol	27.0	32.58
CDY52958	Canola	cytosol	15.26	32.02
CDY35372	Canola	cytosol	7.28	31.63
CDY64738	Canola	extracellular, nucleus, peroxisome	21.6	29.58
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	28.87	29.01
CDX74515	Canola	cytosol	30.05	27.29
CDY16725	Canola	cytosol, extracellular, nucleus	15.96	26.56
CDY48142	Canola	cytosol	11.97	25.89
CDY01651	Canola	mitochondrion	20.42	25.74
CDY22729	Canola	nucleus	13.38	25.0
CDY41220	Canola	cytosol	8.22	22.01
CDY55715	Canola	cytosol, nucleus, plasma membrane	14.79	15.37
CDY53464	Canola	cytosol	14.55	15.2
CDY38511	Canola	cytosol	14.55	15.12
CDY09047	Canola	cytosol	15.26	14.41
CDY47798	Canola	plasma membrane	14.32	14.35
CDY66257	Canola	mitochondrion	13.85	13.72
CDX91627	Canola	cytosol	9.86	12.92
CDY27080	Canola	cytosol	9.62	12.06
CDY22940	Canola	plasma membrane	21.36	10.76

Protein Annotations

EnsemblPlants:CDX73432	EnsemblPlantsGene:GSBRNA2T00108929001	Gene3D:3.80.10.10	GO:A0A078C986	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF08387	ProteinID:CDX73432	ProteinID:CDX73432.1
SEG:seg	SMART:SM00579	TMHMM:TMhelix	UniParc:UPI0004EF1A59	MapMan:35.1	:

Description

BnaC08g25710D

Coordinates

chrLK031799:+:318793..323087

Molecular Weight (calculated)

48823.3 Da

IEP (calculated)

6.285

GRAVY (calculated)

-0.009

Length

426 amino acids

Sequence
(BLAST)

001: MLLYDHRIML FGAKLNYQIL YLVNDCADVG EIRNMISRSV CIHVSCGWRV VAIPRRNSST EPKTLYFLLQ KNSIIVKQKG VIILFDLLHM YLYFMVLLSP
101: ISISQDKRMK EDLPKGPSES TILSVASSAI ANLAMNEKSQ DLIMNKGGAQ LLARNGSWCT CQFMRKSICK SQYGNIFEEA LCWDNSCPIL EDLVVDLDEE
201: DTIQKLTVAV PSLQNLSFYI PWSNDISGFV IDTPALKYFK LRDHNYQSHD RLIENMPYLI EAYVDCCRPD INSLIGSITS VRRLAICLET MLDEVFVFNQ
301: LEHLEVCLCK EHFSNQLFRL LKASSKLKRL HLFFMNSDHY VQADMDDWNE PSTAPECILS SLQSLSWLKY TGEPQEREVV VYILKHALHL KTATIKSFES
401: EVPKFDTLKE LALSSRASAT CQLMFD

Best Arabidopsis Sequence Match ( AT3G54910.1 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.