Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41220 | Canola | cytosol | 45.16 | 35.22 |
| CDY72604 | Canola | extracellular | 66.13 | 27.89 |
| CDY41221 | Canola | cytosol | 69.35 | 26.3 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 65.32 | 25.31 |
| CDX78281 | Canola | cytosol | 60.48 | 23.44 |
| CDY41224 | Canola | cytosol, plasma membrane | 77.42 | 23.24 |
| CDY48142 | Canola | cytosol | 34.68 | 21.83 |
| AT3G54910.2 | Thale cress | cytosol | 62.9 | 20.91 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 41.13 | 19.92 |
| CDX78279 | Canola | cytosol | 60.48 | 19.48 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 61.29 | 19.44 |
| CDX84569 | Canola | mitochondrion | 41.13 | 19.32 |
| CDY40231 | Canola | cytosol | 65.32 | 19.29 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 64.52 | 19.23 |
| CDX78283 | Canola | extracellular, plasma membrane | 60.48 | 18.07 |
| CDX96200 | Canola | extracellular, plasma membrane | 60.48 | 18.07 |
| CDX73430 | Canola | extracellular, vacuole | 60.48 | 18.07 |
| CDY52958 | Canola | cytosol | 29.03 | 17.73 |
| CDX79668 | Canola | cytosol | 41.94 | 14.73 |
| CDY67485 | Canola | cytosol | 37.1 | 12.71 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 46.77 | 12.55 |
| CDY32785 | Canola | cytosol | 37.1 | 12.47 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 28.23 | 11.25 |
| CDY40226 | Canola | cytosol | 8.87 | 10.58 |
| CDX73432 | Canola | extracellular, plasma membrane | 36.29 | 10.56 |
| Bra040954.1-P | Field mustard | cytosol, nucleus, plastid | 12.9 | 9.47 |
| CDX74515 | Canola | cytosol | 33.06 | 8.74 |
| CDY23937 | Canola | mitochondrion | 25.0 | 8.01 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 26.61 | 7.78 |
| CDY22729 | Canola | nucleus | 12.9 | 7.02 |
| CDY22940 | Canola | plasma membrane | 45.97 | 6.74 |
| CDY17463 | Canola | cytosol | 16.13 | 6.71 |
| CDY01651 | Canola | mitochondrion | 16.13 | 5.92 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 14.52 | 4.39 |
| CDY47798 | Canola | plasma membrane | 13.71 | 4.0 |
| CDY53464 | Canola | cytosol | 12.9 | 3.92 |
| CDY38511 | Canola | cytosol | 12.1 | 3.66 |
| CDY66257 | Canola | mitochondrion | 12.1 | 3.49 |
| CDY09047 | Canola | cytosol | 12.1 | 3.33 |
| CDY35372 | Canola | cytosol | 2.42 | 3.06 |
| CDX73429 | Canola | mitochondrion | 2.42 | 2.44 |
| CDY40230 | Canola | cytosol | 1.61 | 1.08 |
| CDX91627 | Canola | cytosol | 2.42 | 0.92 |
| CDY27080 | Canola | cytosol | 2.42 | 0.88 |
| CDY35566 | Canola | cytosol | 0.81 | 0.73 |
| CDY34607 | Canola | cytosol | 0.81 | 0.7 |
| CDY41219 | Canola | cytosol | 0.81 | 0.59 |
| CDX84780 | Canola | cytosol | 0.81 | 0.55 |
Protein Annotations
| EnsemblPlants:CDY40228 | EnsemblPlantsGene:GSBRNA2T00069378001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| PANTHER:PTHR32212 | PFAM:PF07723 | ProteinID:CDY40228 | ProteinID:CDY40228.1 | SUPFAM:SSF52047 | UniParc:UPI0004EE9017 |
| UniProt:A0A078HU03 | MapMan:35.1 | : | : | : | : |
Description
BnaA09g35100DBnaA09g35100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU03]
Coordinates
chrLK032466:+:176973..177607
Molecular Weight (calculated)
14275.5 Da
IEP (calculated)
5.720
GRAVY (calculated)
0.163
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MYTSKSLVIL KLDGEILLDV PRMVSLPSLK TLKLQSVRYV NDETLQRLLS NCPILEDLVV RLREYGDTMQ KLTVVAPSVR SLSLCIPYSH EIAEYVIETP
101: SLKYFKLVDY SNNDHYAFLI DLCF
101: SLKYFKLVDY SNNDHYAFLI DLCF
001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS
Arabidopsis Description
FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.