Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- nucleus 2
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035845.1-P | Field mustard | cytosol, extracellular, nucleus | 100.0 | 100.0 |
| CDY48142 | Canola | cytosol | 69.92 | 90.86 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 19.92 | 41.13 |
| CDX84569 | Canola | mitochondrion | 35.16 | 34.09 |
| CDY41220 | Canola | cytosol | 20.7 | 33.33 |
| CDY72604 | Canola | extracellular | 37.89 | 32.99 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 41.02 | 32.81 |
| CDY41221 | Canola | cytosol | 41.8 | 32.72 |
| CDX78281 | Canola | cytosol | 40.62 | 32.5 |
| CDY52958 | Canola | cytosol | 21.88 | 27.59 |
| CDY41224 | Canola | cytosol, plasma membrane | 44.14 | 27.36 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 42.97 | 26.44 |
| CDX84780 | Canola | cytosol | 18.75 | 26.37 |
| CDY32785 | Canola | cytosol | 37.11 | 25.75 |
| CDX78279 | Canola | cytosol | 38.28 | 25.45 |
| CDY67485 | Canola | cytosol | 35.94 | 25.41 |
| CDX78283 | Canola | extracellular, plasma membrane | 41.02 | 25.3 |
| CDX96200 | Canola | extracellular, plasma membrane | 41.02 | 25.3 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 38.28 | 25.06 |
| CDX79668 | Canola | cytosol | 34.38 | 24.93 |
| CDX73430 | Canola | extracellular, vacuole | 39.84 | 24.58 |
| CDY35566 | Canola | cytosol | 12.89 | 24.09 |
| CDY40231 | Canola | cytosol | 39.06 | 23.81 |
| CDY41219 | Canola | cytosol | 14.84 | 22.49 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 26.56 | 21.86 |
| CDY35372 | Canola | cytosol | 8.2 | 21.43 |
| CDY23937 | Canola | mitochondrion | 32.03 | 21.19 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 35.94 | 19.91 |
| CDX73429 | Canola | mitochondrion | 9.38 | 19.51 |
| CDY17463 | Canola | cytosol | 22.27 | 19.13 |
| CDY34607 | Canola | cytosol | 10.55 | 19.01 |
| CDY40230 | Canola | cytosol | 13.28 | 18.28 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 29.69 | 17.92 |
| CDX74515 | Canola | cytosol | 32.81 | 17.91 |
| CDY22729 | Canola | nucleus | 15.62 | 17.54 |
| CDY40226 | Canola | cytosol | 7.03 | 17.31 |
| CDX73432 | Canola | extracellular, plasma membrane | 26.56 | 15.96 |
| CDY01651 | Canola | mitochondrion | 20.31 | 15.38 |
| CDY22940 | Canola | plasma membrane | 36.72 | 11.11 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 17.58 | 10.98 |
| CDY53464 | Canola | cytosol | 16.8 | 10.54 |
| CDY38511 | Canola | cytosol | 16.8 | 10.49 |
| CDY47798 | Canola | plasma membrane | 16.41 | 9.88 |
| CDY66257 | Canola | mitochondrion | 16.41 | 9.77 |
| CDY09047 | Canola | cytosol | 17.19 | 9.76 |
| CDY27080 | Canola | cytosol | 10.94 | 8.24 |
| CDX91627 | Canola | cytosol | 10.16 | 8.0 |
Protein Annotations
| EnsemblPlants:CDY16725 | EnsemblPlantsGene:GSBRNA2T00094592001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF08387 | ProteinID:CDY16725 | ProteinID:CDY16725.1 | SUPFAM:SSF52047 |
| UniParc:UPI0002541A58 | UniProt:A0A078FQH6 | MapMan:35.1 | : | : | : |
Description
BnaA09g06570DBnaA09g06570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQH6]
Coordinates
chrLK032067:+:48984..50188
Molecular Weight (calculated)
29966.3 Da
IEP (calculated)
5.449
GRAVY (calculated)
-0.227
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLATALSRN LCELFLINEY SNEKPNILPS RLYTCKSLVI LKLRGEIRPD VPRLSCLPSL KTLELLLDKY FQGGPLRRFL FICPVLENLL MNCGWDDYDK
101: GLITVTVPSL QRLTLYLHSQ TEGGMLPRGL VIDSPSLKYL KLRDRHQWSR PGFSIETMPD LEEAYVNVQY WDSSNLLARL LEDSPNVRVL DIFEIDHDDR
201: DYEELISTVR TVRESVLSNL RTFNWSRYFE RRPQEMDLAV YILGEKWSLK DCNNLV
101: GLITVTVPSL QRLTLYLHSQ TEGGMLPRGL VIDSPSLKYL KLRDRHQWSR PGFSIETMPD LEEAYVNVQY WDSSNLLARL LEDSPNVRVL DIFEIDHDDR
201: DYEELISTVR TVRESVLSNL RTFNWSRYFE RRPQEMDLAV YILGEKWSLK DCNNLV
001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS
Arabidopsis Description
FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.