CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34607	Canola	cytosol	31.63	95.77
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	83.95	73.98
CDY35372	Canola	cytosol	10.7	46.94
AT5G60610.1	Thale cress	cytosol	37.91	42.01
CDY53464	Canola	cytosol	38.84	40.93
CDY27080	Canola	cytosol	31.86	40.29
CDY38511	Canola	cytosol	37.91	39.76
CDY55715	Canola	cytosol, nucleus, plasma membrane	37.91	39.76
CDX91627	Canola	cytosol	30.0	39.69
CDY22729	Canola	nucleus	20.93	39.47
CDY35566	Canola	cytosol	11.63	36.5
CDY47798	Canola	plasma membrane	30.47	30.82
CDY40226	Canola	cytosol	7.44	30.77
CDX84780	Canola	cytosol	12.56	29.67
CDY40230	Canola	cytosol	11.86	27.42
CDY41219	Canola	cytosol	10.7	27.22
CDY09047	Canola	cytosol	27.91	26.61
CDY17463	Canola	cytosol	16.05	23.15
CDY72604	Canola	extracellular	15.58	22.79
CDY52958	Canola	cytosol	10.23	21.67
CDX84569	Canola	mitochondrion	12.79	20.83
CDX73428	Canola	cytosol, extracellular, plasma membrane	15.35	20.62
CDX78281	Canola	cytosol	14.42	19.38
CDY67485	Canola	cytosol	16.28	19.34
CDY64738	Canola	extracellular, nucleus, peroxisome	13.72	18.97
CDY41221	Canola	cytosol	14.42	18.96
CDY32785	Canola	cytosol	16.05	18.7
CDX73429	Canola	mitochondrion	5.12	17.89
CDY23937	Canola	mitochondrion	15.12	16.8
CDY22940	Canola	plasma membrane	32.79	16.67
CDY16725	Canola	cytosol, extracellular, nucleus	9.77	16.41
CDY40225	Canola	endoplasmic reticulum, extracellular	14.88	16.37
CDX96200	Canola	extracellular, plasma membrane	15.58	16.14
CDX78283	Canola	extracellular, plasma membrane	15.58	16.14
CDX78279	Canola	cytosol	14.42	16.1
CDY41224	Canola	cytosol, plasma membrane	15.12	15.74
CDX73430	Canola	extracellular, vacuole	14.88	15.42
CDX73431	Canola	endoplasmic reticulum, plasma membrane	14.42	14.9
CDY40231	Canola	cytosol	14.42	14.76
CDX74515	Canola	cytosol	16.05	14.71
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	14.42	14.62
CDX73432	Canola	extracellular, plasma membrane	13.72	13.85
CDX79668	Canola	cytosol	11.16	13.6
CDY01651	Canola	mitochondrion	10.23	13.02
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	13.95	12.99
CDY48142	Canola	cytosol	5.81	12.69
CDY40228	Canola	cytosol, extracellular, nucleus	3.49	12.1
CDY41220	Canola	cytosol	0.23	0.63

Protein Annotations

EnsemblPlants:CDY66257	EnsemblPlantsGene:GSBRNA2T00052389001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	ProteinID:CDY66257
ProteinID:CDY66257.1	SUPFAM:SSF52047	UniParc:UPI0004EF1776	UniProt:A0A078JLM1	MapMan:35.1	:

Description

BnaAnng21920DBnaAnng21920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLM1]

Coordinates

chrLK035172:-:3554..5476

Molecular Weight (calculated)

49653.6 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.197

Length

430 amino acids

Sequence
(BLAST)

001: MAVFHFKNLI FKNQIYRLEM LTRRSSAIPK YHLINLPTLS SLLFKTIWTE SVDYQMNYWL RYYPFFRQKM LSQLAFCPNN GGTETSSTRI CPYIKPPALE
101: SLVLKSCNAE LFQPENIKLW VGIAVSRCVR ELTLSIRYNS PRNKPFVPLP SSFYTCCSSL TALKLKGESI FVDVPQSVNL PSLKTLKLRD VTYLNDDALR
201: LLLSNCTALE ELFIDRYGEA DDNVRALVVE NSTLQRLTLK MYSEHLGVQH VIVTPSLKYF KLYDEGHSLS YSIEHMPKLE EADIDVSSSL DELLGSMTPV
301: KRLSLRQFFN RDDESVLTVG AVFNQLEHVK LSFYSDDWSK LLVWLLRNSP KLRELNIYVD QSDSQFQDYA PVEWKNRSSV PECLQNTLET FKFEGFKGTQ
401: EEGDFLSFFF KNASCLKSTS ITDYVTQRGI

Best Arabidopsis Sequence Match ( AT5G56700.2 )
(BLAST)

001: MWLSKLEFYF SDGSESACLR DFIAKNLPLH KAPIIESLRF CSFFGSLQPK DLKSWVRIAV SRCVRELSIS LHDTTAAVSL PSSLYTCKSL VTLKLYGKKV
101: LLDVPRTVFL PSLKTLQLER LRYSDEDSLR LLLSYCPVLE DLSIVREDYD NLRALVVIVP SLQRLSLEIP GNCSSDGYVI VTPSLKYFKV VDYRESMSYL
201: IEQMPELEEA DIVVLQYPEK LLESVTFFKR LSIRVIFNTY TETVYRDGIV FNRLENLKLC ICNGDWSKLL IQFLKDSPNL RVLNLLVDDY PSSLGDYEPV
301: RWKNNKSSVP KCLLESLETF EFAGYIGTPE ERDFLSYIFK HARCLKSSSI LSRPERYHGI

Arabidopsis Description

FBD / Leucine Rich Repeat domains containing protein [Source:TAIR;Acc:AT5G56700]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.