CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84780	Canola	cytosol	41.6	88.46
CDY41219	Canola	cytosol	24.81	56.8
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	52.97	54.09
CDX74515	Canola	cytosol	64.08	52.88
CDY01651	Canola	mitochondrion	44.7	51.18
CDY35566	Canola	cytosol	18.09	51.09
CDY17463	Canola	cytosol	39.28	51.01
CDY40230	Canola	cytosol	23.51	48.92
AT5G38565.1	Thale cress	cytosol, peroxisome, plastid	42.38	46.99
CDX73429	Canola	mitochondrion	14.47	45.53
CDY52958	Canola	cytosol	23.51	44.83
CDY32785	Canola	cytosol	42.64	44.72
CDY41224	Canola	cytosol, plasma membrane	47.55	44.55
CDY72604	Canola	extracellular	33.59	44.22
CDY67485	Canola	cytosol	41.34	44.2
CDX96200	Canola	extracellular, plasma membrane	47.29	44.1
CDX73430	Canola	extracellular, vacuole	47.29	44.1
CDX78283	Canola	extracellular, plasma membrane	47.29	44.1
CDY40231	Canola	cytosol	47.8	44.05
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	48.06	43.87
CDY40225	Canola	endoplasmic reticulum, extracellular	43.93	43.48
CDX79668	Canola	cytosol	39.28	43.06
CDX73428	Canola	cytosol, extracellular, plasma membrane	35.14	42.5
CDX78281	Canola	cytosol	35.14	42.5
CDX84569	Canola	mitochondrion	28.94	42.42
CDY41221	Canola	cytosol	35.14	41.59
CDY40226	Canola	cytosol	11.11	41.35
CDX73431	Canola	endoplasmic reticulum, plasma membrane	44.44	41.35
CDX78279	Canola	cytosol	40.83	41.04
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	44.19	37.01
CDY34607	Canola	cytosol	13.18	35.92
CDY35372	Canola	cytosol	9.04	35.71
CDY64738	Canola	extracellular, nucleus, peroxisome	28.42	35.37
CDX73432	Canola	extracellular, plasma membrane	35.66	32.39
CDY16725	Canola	cytosol, extracellular, nucleus	21.19	32.03
CDY48142	Canola	cytosol	15.76	30.96
CDY41220	Canola	cytosol	11.89	28.93
CDY22729	Canola	nucleus	16.28	27.63
CDY40228	Canola	cytosol, extracellular, nucleus	8.01	25.0
CDY55715	Canola	cytosol, nucleus, plasma membrane	17.83	16.83
CDY38511	Canola	cytosol	17.57	16.59
CDY53464	Canola	cytosol	17.31	16.42
CDY47798	Canola	plasma membrane	17.83	16.24
CDY09047	Canola	cytosol	18.86	16.19
CDY66257	Canola	mitochondrion	16.8	15.12
CDX91627	Canola	cytosol	11.37	13.54
CDY27080	Canola	cytosol	11.37	12.94
CDY22940	Canola	plasma membrane	24.81	11.35

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GFN7	EnsemblPlants:CDY23937	ProteinID:CDY23937	ProteinID:CDY23937.1
InterPro:F-box-like_dom_sf	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00024440001
InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE16C5	:	:	:

Description

BnaC03g17540DBnaC03g17540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFN7]

Coordinates

chrLK032152:+:44073..45783

Molecular Weight (calculated)

44800.8 Da

IEP (calculated)

5.590

GRAVY (calculated)

-0.271

Length

387 amino acids

Sequence
(BLAST)

001: MKILSFLPTK VAVSTSILSK QWRFLWMWLP NLEYTSTSPI RTYYSNSPAL VEFIDKNLPL HRAPVIERLS LDLTYSRHTQ PEHIKRWLEV AVSRHVRDLD
101: IHYYSEDEND LTYQHDDSLQ GLLDICPALE DLSVDFVREH SMGEITFIVP TLQRLSLFMA DEWDLCGYVI DTPCLKYLKL EDWNYWSHDI EIKDMPELKD
201: AYVDVVSPVL KSVIGSITSV KHLTICSEIS KSGGEYSGGF VFNQLKHLKQ CVCKENSSDL LGQLLKDSPN LRLLDISHME DHGYDEGNEM VCWNQPSRVP
301: ECLLSSLQIL RWSRYFGRPQ ERDIAVYILK RAPRLKKARI IADTQEHDVP NLEMITELAL SSRASSRCEL VFVKGPPVWK DKEDCMC

Best Arabidopsis Sequence Match ( AT5G38570.1 )
(BLAST)

001: MDNINGLPDD LLVKILSFVP TYVAVSTCVL SKRWEFLWMW LPNLEFVSPW DSRPGIVDFI NKKLPIHRAP VIERLCIHIN SNPHIKPEYI KRWIEIAVSH
101: YVRELQIDYH SKTKITLQLE AESYFIDGKY LQQLISGCPV LEDLSLRFCC NDNLREFTVI IPSLQSLSLF LFGNSNLNRY KIDTPSLKYL KLEDWNDPEH
201: YSWTNMPKLR EAYVDVESSN HLKTLIGSIT SVKHLTICCL EDYLYGDGFI FNHLEHLKLC MCPFDSSNLL GQLLKGSPNL QVLDIFEMKR NDIVCWNQPS
301: SVLECLLSSL KILNWSAYFG RPQDRDIAVY ILKNACHLKT ATFLTDKRIN DVRRLKMIKE LRLSPRASST CQLVFGEDF

Arabidopsis Description

Putative FBD-associated F-box protein At5g38570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW4]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.