CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79668	Canola	cytosol	91.29	68.27
Bra023058.1-P	Field mustard	cytosol	96.21	68.1
CDY41219	Canola	cytosol	31.82	49.7
CDX73429	Canola	mitochondrion	22.35	47.97
CDX84780	Canola	cytosol	32.95	47.8
CDY72604	Canola	extracellular	52.65	47.28
CDY41221	Canola	cytosol	56.82	45.87
CDX78281	Canola	cytosol	54.17	44.69
CDY35566	Canola	cytosol	22.73	43.8
CDY40230	Canola	cytosol	30.68	43.55
CDX73428	Canola	cytosol, extracellular, plasma membrane	52.65	43.44
CDY48142	Canola	cytosol	31.44	42.13
CDY40228	Canola	cytosol, extracellular, nucleus	19.32	41.13
CDY34607	Canola	cytosol	20.83	38.73
CDY35372	Canola	cytosol	14.02	37.76
CDY40226	Canola	cytosol	14.77	37.5
CDY40225	Canola	endoplasmic reticulum, extracellular	54.92	37.08
CDX78279	Canola	cytosol	53.79	36.88
CDY52958	Canola	cytosol	27.65	35.96
CDX78283	Canola	extracellular, plasma membrane	56.44	35.9
CDX96200	Canola	extracellular, plasma membrane	56.44	35.9
CDY67485	Canola	cytosol	48.48	35.36
CDY40231	Canola	cytosol	56.06	35.24
CDY17463	Canola	cytosol	39.77	35.23
CDY16725	Canola	cytosol, extracellular, nucleus	34.09	35.16
CDY41224	Canola	cytosol, plasma membrane	54.92	35.11
CDX73431	Canola	endoplasmic reticulum, plasma membrane	54.55	34.62
CDY32785	Canola	cytosol	48.11	34.42
CDX73430	Canola	extracellular, vacuole	53.41	33.98
CDY41220	Canola	cytosol	18.94	31.45
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	52.27	29.87
CDY23937	Canola	mitochondrion	42.42	28.94
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	42.42	26.42
CDX73432	Canola	extracellular, plasma membrane	41.29	25.59
CDY01651	Canola	mitochondrion	32.58	25.44
CDY64738	Canola	extracellular, nucleus, peroxisome	29.92	25.4
CDX74515	Canola	cytosol	44.7	25.16
CDY22729	Canola	nucleus	20.83	24.12
CDY09047	Canola	cytosol	26.14	15.3
CDY47798	Canola	plasma membrane	24.62	15.29
CDY53464	Canola	cytosol	23.48	15.2
CDY38511	Canola	cytosol	23.48	15.12
CDY55715	Canola	cytosol, nucleus, plasma membrane	23.11	14.88
CDY22940	Canola	plasma membrane	45.83	14.3
CDX91627	Canola	cytosol	16.29	13.23
CDY66257	Canola	mitochondrion	20.83	12.79
CDY27080	Canola	cytosol	15.91	12.35

Protein Annotations

EnsemblPlants:CDX84569	EnsemblPlantsGene:GSBRNA2T00141823001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	ProteinID:CDX84569
ProteinID:CDX84569.1	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0004EEC318	MapMan:35.1	:

Description

BnaA03g16610D

Coordinates

chrLK031838:-:133376..134254

Molecular Weight (calculated)

30082.9 Da

IEP (calculated)

7.372

GRAVY (calculated)

0.059

Length

264 amino acids

Sequence
(BLAST)

001: MLPSSLYTCK SLVSVKLNGR RLLVDVPRMV SLPCLKTLLL QDVKYKNEDS LQRLLSNCPV LEDLLVEGCK GDNMVKFIVI VPSLQRLTNH HCLIERMPKL
101: EEAYVELSFN HVYIDRFIGS ITSVKRLTLC IDDVYGDGFV FDQLEHLQLC ACDEQHTSVA VIIRLLKDSP NLRVLDLFKM EYHNPIGLYT WNQPSTVPEC
201: ILSSLQTFKC SGYSGRPGER DLLIYILKNA NHLKTATIWF PTVDMKKELV LSSRASNACQ LVFD

Best Arabidopsis Sequence Match ( AT3G54910.1 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.