Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84569 | Canola | mitochondrion | 68.27 | 91.29 |
| Bra023058.1-P | Field mustard | cytosol | 81.59 | 77.21 |
| CDX96200 | Canola | extracellular, plasma membrane | 57.22 | 48.67 |
| CDX78283 | Canola | extracellular, plasma membrane | 57.22 | 48.67 |
| CDY41224 | Canola | cytosol, plasma membrane | 56.94 | 48.67 |
| CDY67485 | Canola | cytosol | 49.58 | 48.34 |
| CDY17463 | Canola | cytosol | 40.23 | 47.65 |
| CDY40231 | Canola | cytosol | 56.66 | 47.62 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 55.81 | 47.36 |
| CDX73430 | Canola | extracellular, vacuole | 55.52 | 47.23 |
| CDY41220 | Canola | cytosol | 21.25 | 47.17 |
| CDY32785 | Canola | cytosol | 49.29 | 47.15 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 52.12 | 47.06 |
| CDY41221 | Canola | cytosol | 42.78 | 46.18 |
| CDY72604 | Canola | extracellular | 37.96 | 45.58 |
| CDY41219 | Canola | cytosol | 21.81 | 45.56 |
| CDX78281 | Canola | cytosol | 40.79 | 45.0 |
| CDX73429 | Canola | mitochondrion | 15.58 | 44.72 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 39.94 | 44.06 |
| CDX84780 | Canola | cytosol | 21.81 | 42.31 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 14.73 | 41.94 |
| CDX78279 | Canola | cytosol | 45.61 | 41.82 |
| CDY40230 | Canola | cytosol | 21.81 | 41.4 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 52.41 | 40.04 |
| CDY23937 | Canola | mitochondrion | 43.06 | 39.28 |
| CDY48142 | Canola | cytosol | 20.68 | 37.06 |
| CDY40226 | Canola | cytosol | 10.76 | 36.54 |
| CDY35566 | Canola | cytosol | 13.88 | 35.77 |
| CDY01651 | Canola | mitochondrion | 33.71 | 35.21 |
| CDY52958 | Canola | cytosol | 19.83 | 34.48 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 24.93 | 34.38 |
| CDX74515 | Canola | cytosol | 45.04 | 33.9 |
| CDY34607 | Canola | cytosol | 13.6 | 33.8 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 40.51 | 33.73 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 25.21 | 28.62 |
| CDX73432 | Canola | extracellular, plasma membrane | 32.58 | 27.0 |
| CDY35372 | Canola | cytosol | 7.37 | 26.53 |
| CDY22729 | Canola | nucleus | 12.75 | 19.74 |
| CDY22940 | Canola | plasma membrane | 32.86 | 13.71 |
| CDY47798 | Canola | plasma membrane | 16.15 | 13.41 |
| CDY53464 | Canola | cytosol | 15.01 | 12.99 |
| CDY09047 | Canola | cytosol | 16.43 | 12.86 |
| CDY38511 | Canola | cytosol | 14.45 | 12.44 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 14.16 | 12.2 |
| CDY66257 | Canola | mitochondrion | 13.6 | 11.16 |
| CDX91627 | Canola | cytosol | 9.35 | 10.15 |
| CDY27080 | Canola | cytosol | 8.78 | 9.12 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX79668 | ProteinID:CDX79668 | ProteinID:CDX79668.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00132463001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | PFAM:PF00646 | PFAM:PF07723 |
| PFAM:PF08387 | PFscan:PS50181 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI0004EF20CE | : | : | : | : |
Description
BnaC03g20040D
Coordinates
chrLK031818:+:1463933..1465165
Molecular Weight (calculated)
40466.4 Da
IEP (calculated)
7.584
GRAVY (calculated)
-0.016
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKISRLPDE LLVKILSFLP TKVAVSTSIL SKQWDFLWMW LPKLDYSTRK YSESECTRAP IIESFSLDFL ASQFKPVTIR SWLLTAVSRN LREVEVSHGC
101: NNKVLNMLPS SLYTCKSLVS LKLNGRRLLV DVPRMVSLPC LKTFLLQDVK YKNEDSLQRL LSNCPVLEDL VVEGCKGDNM VKFIVIVPSL QRLTNHHCLI
201: ERMPKLEEAY VELSFNPVYI DRFIGSITSV KRLTLCIDDV YGDGFVFDQL EHLQLCTCDE QHTSDLFKME YHNPIGLYTW NQPSTVPECI LSSLQTFKCS
301: GYSGRPGERD LLIYILKNAN HLKTATIWFP TVDMKKELVL SSRASNACQL VFD
101: NNKVLNMLPS SLYTCKSLVS LKLNGRRLLV DVPRMVSLPC LKTFLLQDVK YKNEDSLQRL LSNCPVLEDL VVEGCKGDNM VKFIVIVPSL QRLTNHHCLI
201: ERMPKLEEAY VELSFNPVYI DRFIGSITSV KRLTLCIDDV YGDGFVFDQL EHLQLCTCDE QHTSDLFKME YHNPIGLYTW NQPSTVPECI LSSLQTFKCS
301: GYSGRPGERD LLIYILKNAN HLKTATIWFP TVDMKKELVL SSRASNACQL VFD
001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
Arabidopsis Description
At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.