Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35372 | Canola | cytosol | 28.87 | 41.84 |
| CDY35566 | Canola | cytosol | 36.62 | 37.96 |
| CDY66257 | Canola | mitochondrion | 95.77 | 31.63 |
| CDX84780 | Canola | cytosol | 39.44 | 30.77 |
| CDY41219 | Canola | cytosol | 34.51 | 28.99 |
| CDY40226 | Canola | cytosol | 21.13 | 28.85 |
| CDY40230 | Canola | cytosol | 33.8 | 25.81 |
| CDY22729 | Canola | nucleus | 38.73 | 24.12 |
| CDX84569 | Canola | mitochondrion | 38.73 | 20.83 |
| CDY17463 | Canola | cytosol | 40.85 | 19.46 |
| AT5G60610.1 | Thale cress | cytosol | 51.41 | 18.81 |
| CDY72604 | Canola | extracellular | 37.32 | 18.03 |
| CDX73429 | Canola | mitochondrion | 15.49 | 17.89 |
| CDY38511 | Canola | cytosol | 50.7 | 17.56 |
| CDY52958 | Canola | cytosol | 24.65 | 17.24 |
| CDX91627 | Canola | cytosol | 38.73 | 16.92 |
| CDY53464 | Canola | cytosol | 47.89 | 16.67 |
| CDY27080 | Canola | cytosol | 39.44 | 16.47 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 36.62 | 16.25 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 46.48 | 16.1 |
| CDY67485 | Canola | cytosol | 40.85 | 16.02 |
| CDX78281 | Canola | cytosol | 35.92 | 15.94 |
| CDY32785 | Canola | cytosol | 40.14 | 15.45 |
| CDY41221 | Canola | cytosol | 34.51 | 14.98 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 30.99 | 14.15 |
| CDY47798 | Canola | plasma membrane | 40.85 | 13.65 |
| CDX79668 | Canola | cytosol | 33.8 | 13.6 |
| CDY09047 | Canola | cytosol | 42.96 | 13.53 |
| CDY23937 | Canola | mitochondrion | 35.92 | 13.18 |
| CDX96200 | Canola | extracellular, plasma membrane | 38.03 | 13.01 |
| CDX78283 | Canola | extracellular, plasma membrane | 38.03 | 13.01 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 38.73 | 12.97 |
| CDY41224 | Canola | cytosol, plasma membrane | 37.32 | 12.83 |
| CDY01651 | Canola | mitochondrion | 30.28 | 12.72 |
| CDX73430 | Canola | extracellular, vacuole | 36.62 | 12.53 |
| CDX78279 | Canola | cytosol | 33.8 | 12.47 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 33.8 | 12.28 |
| CDX74515 | Canola | cytosol | 40.14 | 12.15 |
| CDY40231 | Canola | cytosol | 35.21 | 11.9 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 38.03 | 11.69 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 33.8 | 11.54 |
| CDY48142 | Canola | cytosol | 15.49 | 11.17 |
| CDX73432 | Canola | extracellular, plasma membrane | 33.1 | 11.03 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 19.01 | 10.55 |
| CDY22940 | Canola | plasma membrane | 40.85 | 6.86 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 0.7 | 0.81 |
| CDY41220 | Canola | cytosol | 0.7 | 0.63 |
Protein Annotations
| EnsemblPlants:CDY34607 | EnsemblPlantsGene:GSBRNA2T00057054001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF08387 | ProteinID:CDY34607 | ProteinID:CDY34607.1 | SUPFAM:SSF52047 |
| UniParc:UPI0004EF3571 | UniProt:A0A078HAA5 | MapMan:35.1 | : | : | : |
Description
BnaC08g41660DBnaC08g41660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAA5]
Coordinates
chrLK032338:+:35418..36628
Molecular Weight (calculated)
16439.4 Da
IEP (calculated)
4.649
GRAVY (calculated)
-0.337
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKLEEADID VSSSLDELLG SMTSVKRLSL RQFFNRDDES VLTVGAVFNQ LEHVKLSFYS DDWSKLLVWL LRNSPKLREL NIYVDWNNRS SVPECLQNTL
101: ETFKFEGFMG TQEEGDFLSF FFKNASCLKS TSITDRVTQR GY
101: ETFKFEGFMG TQEEGDFLSF FFKNASCLKS TSITDRVTQR GY
001: MDRISGLPDE LLVKIISFVP TKVAVSTSIL SKRWESLWKW VPKLECDCTE PALRDFILKN LPLQARIIES LYLRFRRESF LFQDIKLWGG IAISHCLREL
101: RIDFFSHYAN PYVILPRSLY TCKSLVTLKL LGLGIRVDVP RDVCLPSLKT LLLQCVAYSE EDPLRLLLSC CPVLEDLVIE LDDANQNVKA LVVIVPTLQC
201: LSLKIPASCS DERYLIVTPS LKYFKVEDDR EIFNALIENM PELEEADIYV TQHIETLLES VTSVKRLTLR QLYNSIDEYK CRAGIVFKQL EQLELSICSD
301: NWTKLVIWLL QNSPNLRVLN LDADSDYERY EEYEQDNWKN IQRSVPKCLK SSLKTLEFAG YTARPEERDF LSFIFKKARC LKTSSISH
101: RIDFFSHYAN PYVILPRSLY TCKSLVTLKL LGLGIRVDVP RDVCLPSLKT LLLQCVAYSE EDPLRLLLSC CPVLEDLVIE LDDANQNVKA LVVIVPTLQC
201: LSLKIPASCS DERYLIVTPS LKYFKVEDDR EIFNALIENM PELEEADIYV TQHIETLLES VTSVKRLTLR QLYNSIDEYK CRAGIVFKQL EQLELSICSD
301: NWTKLVIWLL QNSPNLRVLN LDADSDYERY EEYEQDNWKN IQRSVPKCLK SSLKTLEFAG YTARPEERDF LSFIFKKARC LKTSSISH
Arabidopsis Description
FBD-associated F-box protein At5g60610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.