Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40226 | Canola | cytosol | 20.2 | 39.42 |
| CDY35566 | Canola | cytosol | 25.62 | 37.96 |
| CDY35372 | Canola | cytosol | 18.23 | 37.76 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 17.73 | 29.03 |
| CDX84780 | Canola | cytosol | 25.12 | 28.02 |
| CDX84569 | Canola | mitochondrion | 35.96 | 27.65 |
| CDY72604 | Canola | extracellular | 39.9 | 27.55 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 38.92 | 24.69 |
| CDY34607 | Canola | cytosol | 17.24 | 24.65 |
| AT5G38580.1 | Thale cress | cytosol | 20.2 | 24.4 |
| CDX78281 | Canola | cytosol | 38.42 | 24.38 |
| AT5G38590.2 | Thale cress | cytosol | 48.77 | 24.15 |
| CDY23937 | Canola | mitochondrion | 44.83 | 23.51 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 48.77 | 23.35 |
| CDY40230 | Canola | cytosol | 20.69 | 22.58 |
| CDY41219 | Canola | cytosol | 18.72 | 22.49 |
| CDY41221 | Canola | cytosol | 35.96 | 22.32 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 27.59 | 21.88 |
| CDY48142 | Canola | cytosol | 21.18 | 21.83 |
| CDY17463 | Canola | cytosol | 32.02 | 21.81 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 33.0 | 21.54 |
| CDX73430 | Canola | extracellular, vacuole | 41.87 | 20.48 |
| CDX74515 | Canola | cytosol | 47.29 | 20.47 |
| CDY41224 | Canola | cytosol, plasma membrane | 41.38 | 20.34 |
| CDX79668 | Canola | cytosol | 34.48 | 19.83 |
| CDY22729 | Canola | nucleus | 22.17 | 19.74 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 39.9 | 19.47 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 36.95 | 19.18 |
| CDY40231 | Canola | cytosol | 38.92 | 18.81 |
| CDX78283 | Canola | extracellular, plasma membrane | 38.42 | 18.8 |
| CDX96200 | Canola | extracellular, plasma membrane | 38.42 | 18.8 |
| CDX78279 | Canola | cytosol | 35.47 | 18.7 |
| CDY32785 | Canola | cytosol | 33.5 | 18.43 |
| CDY67485 | Canola | cytosol | 32.02 | 17.96 |
| CDX73432 | Canola | extracellular, plasma membrane | 32.02 | 15.26 |
| CDY01651 | Canola | mitochondrion | 24.14 | 14.5 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 32.51 | 14.29 |
| CDY41220 | Canola | cytosol | 10.84 | 13.84 |
| CDY53464 | Canola | cytosol | 24.63 | 12.25 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 23.65 | 11.71 |
| CDY38511 | Canola | cytosol | 22.66 | 11.22 |
| CDY66257 | Canola | mitochondrion | 21.67 | 10.23 |
| CDY47798 | Canola | plasma membrane | 20.2 | 9.65 |
| CDY09047 | Canola | cytosol | 20.2 | 9.09 |
| CDX91627 | Canola | cytosol | 13.3 | 8.31 |
| CDX73429 | Canola | mitochondrion | 4.93 | 8.13 |
| CDY27080 | Canola | cytosol | 12.81 | 7.65 |
| CDY22940 | Canola | plasma membrane | 31.03 | 7.45 |
Protein Annotations
| EnsemblPlants:CDY52958 | EnsemblPlantsGene:GSBRNA2T00008224001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR32212 |
| PANTHER:PTHR32212:SF173 | ProteinID:CDY52958 | ProteinID:CDY52958.1 | SEG:seg | SUPFAM:SSF52047 | UniParc:UPI0004EDB773 |
| UniProt:A0A078IVF0 | MapMan:35.1 | : | : | : | : |
Description
BnaC03g77960DBnaC03g77960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVF0]
Coordinates
chrLK033145:+:71087..72337
Molecular Weight (calculated)
23818.7 Da
IEP (calculated)
4.085
GRAVY (calculated)
0.042
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKISELPDE LTVMIKANHS LRFEISSTRL ESLTYVGVDS LQNLLSMCPF LEDLEVRFIQ DDYPQMFAVI FPLLLKLTLS LPDCEWDFDE YEIDTPFLEY
101: LKLEDWNESH WLFKKNMPTL REAYVRVESY AFKSVVRSIT SVKRLTICSE VEEDQDVYGF VFDQLEHLEL CVCKDDSLNL LPQFLNDSPN LRVLDISIII
201: ILI
101: LKLEDWNESH WLFKKNMPTL REAYVRVESY AFKSVVRSIT SVKRLTICSE VEEDQDVYGF VFDQLEHLEL CVCKDDSLNL LPQFLNDSPN LRVLDISIII
201: ILI
001: MDKINGLPDD LLVKILSYVP TDIAVSTSIL SKRWEFLWMW LPNLDYTSRW CRKPGDVGLR DFIHKNLPLH RAPVIESLRF HSNSPDIKPE DIRRWIEIAV
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMVCLPS LKTLLLDNVS FVEGKSLQEL LSICPVLEDL SVYCDDYENT KELTIVVPSL
201: LSLSLYIPDE WLLDGYWIDT PSLEYLKLED WNSCDHLSLI KNMPKLREAY VDAKCFLPKS VIESITSVKH LTICSKDGYG DGFVFNQLEH LTLCVCRGDS
301: PSLLGQLLKD SPNLRILEIS VMEDHVDDVG ISLDGWNQPS SVPECLLSSL QIFKWPQYLG RPEDRDIAVY ILKNARHLKK TTILADRCER FVTQRRMIKE
401: LLQALPARIC
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMVCLPS LKTLLLDNVS FVEGKSLQEL LSICPVLEDL SVYCDDYENT KELTIVVPSL
201: LSLSLYIPDE WLLDGYWIDT PSLEYLKLED WNSCDHLSLI KNMPKLREAY VDAKCFLPKS VIESITSVKH LTICSKDGYG DGFVFNQLEH LTLCVCRGDS
301: PSLLGQLLKD SPNLRILEIS VMEDHVDDVG ISLDGWNQPS SVPECLLSSL QIFKWPQYLG RPEDRDIAVY ILKNARHLKK TTILADRCER FVTQRRMIKE
401: LLQALPARIC
Arabidopsis Description
FBD-associated F-box protein At5g38590 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.