Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35566 | Canola | cytosol | 32.74 | 40.15 |
| AT4G15075.1 | Thale cress | cytosol | 31.55 | 31.55 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 54.17 | 28.26 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 61.31 | 27.18 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 51.79 | 24.93 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 60.12 | 23.82 |
| Bra030421.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 58.93 | 23.74 |
| AT3G54910.2 | Thale cress | cytosol | 50.6 | 22.79 |
| AT5G38590.2 | Thale cress | cytosol | 54.76 | 22.44 |
| AT4G10400.1 | Thale cress | cytosol | 50.6 | 20.78 |
| CDY52958 | Canola | cytosol | 24.4 | 20.2 |
| AT5G56700.2 | Thale cress | cytosol | 32.14 | 15.0 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 27.38 | 14.79 |
| AT4G00315.1 | Thale cress | cytosol | 36.9 | 14.06 |
| AT2G26860.2 | Thale cress | cytosol | 33.33 | 13.83 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 20.83 | 13.31 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 38.1 | 13.01 |
| AT5G62970.1 | Thale cress | cytosol | 33.33 | 12.47 |
| AT5G60610.1 | Thale cress | cytosol | 28.57 | 12.37 |
| AT1G19410.1 | Thale cress | cytosol | 30.95 | 11.95 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 27.98 | 11.69 |
| AT5G56410.1 | Thale cress | cytosol | 31.55 | 10.54 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 12.5 | 6.65 |
| AT4G15060.1 | Thale cress | cytosol | 17.26 | 5.38 |
Protein Annotations
| ArrayExpress:AT5G38580 | EnsemblPlants:AT5G38580.1 | EnsemblPlantsGene:AT5G38580 | EntrezGene:833847 | GO:GO:0005575 | GO:GO:0008150 |
| InterPro:FBD | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF08387 | ProteinID:AED94337.1 | ProteinID:BAB10148.1 |
| RefSeq:AT5G38580 | RefSeq:AT5G38580-TAIR-G | RefSeq:NP_198674.1 | SMART:SM00579 | TAIR:AT5G38580 | TAIR:AT5G38580.1 |
| Unigene:At.55223 | UniParc:UPI00000A12D7 | UniProt:Q9FFW3 | MapMan:35.1 | : | : |
Description
FBD-like domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFW3]
Coordinates
chr5:-:15451164..15451842
Molecular Weight (calculated)
19288.2 Da
IEP (calculated)
4.637
GRAVY (calculated)
-0.100
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MYLMNMPNLR EAYVDVVSSD ILQYDGFDDG YVFNQLKHLN LCVCKEESSN LLGQLLKDSP NLRILDISVV KDHGTDERNG MVSWNQPNFV PECLLSSLQT
101: LLWSRYFGRQ QDRDIAVYIL KNACHLKTAT ILADTDEHDV PNLQMIKELA LSLRTSVICQ LVFVEYLN
101: LLWSRYFGRQ QDRDIAVYIL KNACHLKTAT ILADTDEHDV PNLQMIKELA LSLRTSVICQ LVFVEYLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.