Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 58.06 | 51.99 |
| AT5G60610.1 | Thale cress | cytosol | 55.83 | 51.8 |
| Bra022582.1-P | Field mustard | cytosol | 57.22 | 51.76 |
| AT2G26860.2 | Thale cress | cytosol | 54.17 | 48.15 |
| CDY27080 | Canola | cytosol | 45.28 | 47.94 |
| CDX91627 | Canola | cytosol | 42.5 | 47.08 |
| AT4G00315.1 | Thale cress | cytosol | 47.78 | 39.0 |
| AT5G62970.1 | Thale cress | cytosol | 43.61 | 34.97 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 47.5 | 34.76 |
| AT4G15075.1 | Thale cress | cytosol | 15.83 | 33.93 |
| AT5G38580.1 | Thale cress | cytosol | 15.0 | 32.14 |
| AT5G56410.1 | Thale cress | cytosol | 43.33 | 31.01 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 26.11 | 30.23 |
| AT1G19410.1 | Thale cress | cytosol | 35.28 | 29.2 |
| AT4G15060.1 | Thale cress | cytosol | 39.17 | 26.16 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 20.56 | 22.98 |
| AT3G54910.2 | Thale cress | cytosol | 22.5 | 21.72 |
| AT5G38590.2 | Thale cress | cytosol | 23.06 | 20.24 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 20.56 | 19.53 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 18.89 | 19.48 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 13.06 | 17.87 |
| AT4G10400.1 | Thale cress | cytosol | 20.28 | 17.85 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 10.56 | 12.03 |
Protein Annotations
| ArrayExpress:AT5G56700 | EnsemblPlants:AT5G56700.2 | EnsemblPlantsGene:AT5G56700 | EntrezGene:835771 | Gene3D:3.80.10.10 | GO:GO:0008150 |
| InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 |
| PFAM:PF07723 | PFAM:PF08387 | ProteinID:ANM70567.1 | RefSeq:AT5G56700 | RefSeq:AT5G56700-TAIR-G | RefSeq:NP_001332164.1 |
| SUPFAM:SSF52047 | TAIR:AT5G56700 | UniParc:UPI00084935B0 | UniProt:A0A1P8BG89 | MapMan:35.1 | : |
Description
FBD / Leucine Rich Repeat domains containing protein [Source:TAIR;Acc:AT5G56700]
Coordinates
chr5:+:22941750..22943587
Molecular Weight (calculated)
41504.4 Da
IEP (calculated)
7.259
GRAVY (calculated)
-0.014
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLSKLEFYF SDGSESACLR DFIAKNLPLH KAPIIESLRF CSFFGSLQPK DLKSWVRIAV SRCVRELSIS LHDTTAAVSL PSSLYTCKSL VTLKLYGKKV
101: LLDVPRTVFL PSLKTLQLER LRYSDEDSLR LLLSYCPVLE DLSIVREDYD NLRALVVIVP SLQRLSLEIP GNCSSDGYVI VTPSLKYFKV VDYRESMSYL
201: IEQMPELEEA DIVVLQYPEK LLESVTFFKR LSIRVIFNTY TETVYRDGIV FNRLENLKLC ICNGDWSKLL IQFLKDSPNL RVLNLLVDDY PSSLGDYEPV
301: RWKNNKSSVP KCLLESLETF EFAGYIGTPE ERDFLSYIFK HARCLKSSSI LSRPERYHGI
101: LLDVPRTVFL PSLKTLQLER LRYSDEDSLR LLLSYCPVLE DLSIVREDYD NLRALVVIVP SLQRLSLEIP GNCSSDGYVI VTPSLKYFKV VDYRESMSYL
201: IEQMPELEEA DIVVLQYPEK LLESVTFFKR LSIRVIFNTY TETVYRDGIV FNRLENLKLC ICNGDWSKLL IQFLKDSPNL RVLNLLVDDY PSSLGDYEPV
301: RWKNNKSSVP KCLLESLETF EFAGYIGTPE ERDFLSYIFK HARCLKSSSI LSRPERYHGI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.